Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq51122 123 2e-23 >seq51122 Length=156195299 Score = 123 bits (136), Expect = 2e-23 Identities = 271/397 (68%), Gaps = 23/397 (6%) Strand=Plus/Minus Query 22537 ATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGAAAATATACATGCTGAA 22596 ||| |||||||| | ||||||||| || || | || |||||||| |||||| ||||| Sbjct 44959832 ATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAA 44959773 Query 22597 ATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG----AATCAAGCCGCATTGTT 22652 ||||||| || || ||| ||| ||| | | ||||| || ||| || | Sbjct 44959772 ATGTATAGTCTCCTTATTGACAC-TTAC-ATC-AAAGATCCCAAAGAAAGGGAATTTATC 44959716 Query 22653 TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCACAGTGGGC--TGCACAAT 22708 |||| || |||| ||||| ||||| || |||||| | ||||| ||| Sbjct 44959715 TTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGC----- 44959661 Query 22709 GGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTCTCTTGGCCTTTGCGGCTGT 22763 |||| || | ||| | | | |||| | | |||| | | ||||| || || || Sbjct 44959660 -GCTGGATTGGGGACAAAGAGGCTACCTATGGTGA-ACGTGTTGTAGCCTTCGCTGCAGT 44959603 Query 22764 TGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCT 22823 ||||||||| | ||||| || || ||||| | ||||||||||| |||||||| | Sbjct 44959602 AGAAGGCGTCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGACC 44959543 Query 22824 CATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGA 22883 ||||| || | |||||||||| || | |||||| | || || ||| |||||||||| Sbjct 44959542 GATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGA 44959483 Query 22884 CTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAA 22920 |||||||| || |||| | || ||| | ||||| Sbjct 44959482 TTTTGCTTGCTTGATGTTCAAACACCTGGTACACAAA 44959446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 22777 TTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTG 22836 |||||||| || ||||| ||||||||||| ||||||| || ||||| || | Sbjct 144142833 TTTTCTGGTTCTTTTGCATTGATATTCTGGCTCAAGAAACAAGGACTGATGCCTGGCCTC 144142892 Query 22837 GCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 | |||||||| || | |||||| |||| || ||| |||||||| |||||||||| Sbjct 144142893 ACATTTTCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACTTTGCTTG 144142948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355966439828605