Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq37270 120 3e-22 seq45999 102 8e-17 seq45237 102 8e-17 >seq37270 Length=136387465 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || | ||| |||| || ||||| | || |||||||| || ||||| || || | Sbjct 127296899 CCCCCCCTTAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 127296958 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || | ||||| |||||||| |||||| |||||| | ||||| || ||||| Sbjct 127296959 AGGGTGCGTCCA-TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 127297017 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| ||| || | | || | ||||| |||||||||| Sbjct 127297018 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 127297077 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 127297078 CTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 127297125 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||||||||| || ||||| || || | |||| || | ||||| ||||| || || Sbjct 127297841 GTAGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCA-TCTTCCAGCTGCTTTCC 127297899 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| |||||| | ||||||||| ||||| ||||| || ||||| ||| ||| ||| Sbjct 127297900 CGCAAAGATCAACCTTTGCTGATCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCTTT 127297959 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| ||||||| ||||||| ||| | |||||||| |||| || Sbjct 127297960 GACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTAATGGTCTTGCCAGTCAGGGT 127298019 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127298020 CTTCACGAAGATCTGCAT 127298037 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| || |||| ||||| ||||| || || Sbjct 127298297 GTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 127298356 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| || Sbjct 127298357 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTG 127298416 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | |||||||| |||| || Sbjct 127298417 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 127298476 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127298477 TTCACGAAGATCTGCAT 127298493 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| || || || |||| ||||| ||||| || || Sbjct 127297385 GTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 127297444 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| ||| Sbjct 127297445 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCTTTG 127297504 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| ||||||| ||| | |||||||| || | || Sbjct 127297505 ACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATAGTCTTGCCAGTGAGTGTC 127297564 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127297565 TTCACGAAGATCTGCAT 127297581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| || |||| ||||| |||||||| || Sbjct 127298069 GTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGTTTTCCG 127298128 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| ||||| || ||||| ||| ||| || Sbjct 127298129 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTTGCCTTG 127298188 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||| ||||||| || | |||||||| |||| || Sbjct 127298189 ACGTTCTCAATAGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTC 127298248 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127298249 TTCACGAAGATCTGCAT 127298265 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| |||||||| ||| Sbjct 127297613 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGTTTCCCA 127297672 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| ||||| ||| ||| || Sbjct 127297673 GCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTTG 127297732 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||||||||| | || | ||||| || |||| || Sbjct 127297733 ACGTTCTCAATAGTGTCACTAGGCTCCACCTCGAGAGTGATGGTCTTACCAGTCAGGGTC 127297792 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127297793 TTCACGAAGATCTGCAT 127297809 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| ||||| || |||| ||||| ||||| || || Sbjct 127298525 GTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTTCCG 127298584 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||| || || ||| ||| || Sbjct 127298585 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTG 127298644 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 127298645 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGAGTC 127298704 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127298705 TTCACGAAGATCTGCAT 127298721 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || || | ||||| |||||||| || Sbjct 127297157 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGTTTCCCG 127297216 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| | ||||| || ||||| |||||||| || || ||| ||| || Sbjct 127297217 GCAAAAATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCTTGGATCTTTGCCTTG 127297276 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||||||||| | ||| | ||||| || |||| || Sbjct 127297277 ACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTACCAGTCAGGGTC 127297336 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 127297337 TTCACGAAGATCTGCAT 127297353 >seq45999 Length=10578 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 9264 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 9205 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||||||||| || ||||||||||| Sbjct 9204 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGGGGATGCCTTCTTTA 9145 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | || | ||||| ||||||||||||| | ||| | Sbjct 9144 TCCTGGATCTTGGCTTTCACATTTTTGATGGTGTCACTGGGCTCCACCTCCAGGGTAATG 9085 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || || || || |||||| Sbjct 9084 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATA 9049 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 8976 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 8917 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| |||||||||| || | ||| | Sbjct 8916 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATA 8857 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 8856 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 8821 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 8820 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 8761 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| |||| || || ||| |||| || | ||||| ||| | || Sbjct 8760 AGAGTGCGGCCATCTTCCAGCTACTTGCCTGCAAAGATGAGCCTCTGCTGGTCGCGGGGA 8701 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||| ||||||| || |||||| || | | ||| | ||||| |||||||||| Sbjct 8700 ATGTCTTCTTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 8641 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 8640 TCTAGGGTGATGGTCTTGCCGGTAAGGGTTTTCACGAAGATCTGCAT 8594 >seq45237 Length=73212453 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| |||||||| ||||||||||| Sbjct 16727475 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTA 16727416 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 16727415 TCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16727356 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 16727355 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 16727320 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || |||||||| || ||||| || || | |||| Sbjct 16727763 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 16727704 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || ||||||||||| Sbjct 16727703 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTA 16727644 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||||||||| | ||| | Sbjct 16727643 TCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 16727584 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 16727583 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 16727548 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || ||||| || || Sbjct 16727319 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 16727260 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| ||||| || || ||| |||| || | ||||| ||||| || Sbjct 16727259 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 16727200 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | ||| | ||||| ||||||||||| Sbjct 16727199 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16727140 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | |||||||| || | ||||| ||||| || ||||| Sbjct 16727139 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAGATCTGCAT 16727093 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 ||| || || |||| ||||||||||||||||| || || | || || | || | | Sbjct 10340762 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCA-T 10340704 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 |||| || || || |||||| ||||| | | ||||||||| ||||| || |||| || | Sbjct 10340703 CTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTTCTTAT 10340644 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || |||| | ||| | | || | || || ||||| | ||| | | Sbjct 10340643 CCTGGATCTTGGCCTTTACATTTTCTATCATATCTGAAGGTTCAACCTCGAGGGTGATGG 10340584 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || || | ||||| ||||| || ||||| Sbjct 10340583 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10340550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495682433772000