Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq51122 307 1e-78 seq5641 123 2e-23 seq1 114 1e-20 >seq51122 Length=156195299 Score = 307 bits (340), Expect = 1e-78 Identities = 541/779 (69%), Gaps = 17/779 (2%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| ||||||| | |||| ||| || | || | | || | || ||||| | Sbjct 44959131 TAGAAGTCAGCATCTAAGGTAAAAGAATTCTC-TGTTGGACTTGACACCACTCCCATCCT 44959189 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| | |||||||||||||| ||| |||||| ||||| || Sbjct 44959190 CTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCTC 44959244 Query 13643 CATAAAATCAAATGGATT-TATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 13701 |||||| |||||||| | | | | ||| ||| | | |||| ||||| | | | Sbjct 44959245 CATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAA-AACCCAGTTCCAGCATAA 44959303 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 ||| || || | ||||||||| ||||| ||||| | | |||||||| || || || | Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 | ||||| | | ||| | ||||| | |||||| ||||| | | ||||| | Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCAT---TGATAATTA 44959420 Query 13822 TTGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAA 13878 || | | |||| | || | | | || ||||| || || || || |||| Sbjct 44959421 TTTCTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAA 44959480 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 ||||||| || | ||||||||||| ||||||||||| || ||||| || | || |||| Sbjct 44959481 AATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCA 44959540 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCT 13998 || ||||||||| || | ||| ||||| | ||||| || ||||||||||| | || | Sbjct 44959541 TCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTT 44959600 Query 13999 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14058 | |||||||| || |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 44959601 CTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGC 44959660 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14118 ||||| || | || || || | | || ||| |||||||| ||||| || | | Sbjct 44959661 GCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAA 44959720 Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 ||||| | ||||| | | | ||||| || |||||||| | |||||||||||||| | Sbjct 44959721 ATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44959780 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT- 14237 ||||||||||||| || || || || ||||| || || | ||||| | || ||| Sbjct 44959781 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44959840 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 | || | ||||| || ||||||||||||| ||||| |||||||| |||||||| || Sbjct 44959841 TTTGACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44959898 Score = 114 bits (126), Expect = 1e-20 Identities = 302/464 (65%), Gaps = 33/464 (7%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| || | ||| ||||| ||||| || || |||||||| Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 144142769 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| |||| | | || || || | | | |||||||||||| ||||| Sbjct 144142768 ATCCAACAGAAGACCCAACCTGCCTTCTTCTTGA-CACAGGCATTGTTTCAATGGCATTG 144142710 Query 14112 AATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | ||||| | ||||| || ||| || ||||| |||||||| | ||| || Sbjct 144142709 AAGAGAAATTCCCTTTCTTTGTTATCTTTAA---TATGTGTCAATAAGGAGATTATTTAT 144142653 Query 14171 TTC--------------------------AGAGTGTATGTTTTCCATAGCTATCTGAAAA 14204 ||| ||| ||||||||||| ||||| || || || Sbjct 144142652 TTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAAT 144142593 Query 14205 CCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTT 14264 ||||| ||||| | ||| | || ||||| |||| ||| |||| ||| Sbjct 144142592 CCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTT 144142533 Query 14265 TCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14306 |||| | ||| ||||||| |||||||| || ||| |||||| Sbjct 144142532 TCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATG 144142489 >seq5641 Length=113028656 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 102562830 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 102562889 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 102562890 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 102562949 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 102562950 CTACAACACGTTCACC 102562965 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 102560508 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 102560566 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 102560567 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 102560626 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 102560627 CATAAAGTCAAATGGGTT 102560644 >seq1 Length=229942017 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14096 TGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 14155 ||||||||| | || || | | ||||| | ||||| | | | ||||| || ||||| Sbjct 89926920 TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAAT 89926861 Query 14156 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 ||| | |||||||||||||| ||| |||||||||| || || || || |||| || || Sbjct 89926860 AAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACA 89926801 Query 14216 TCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTAT 14275 ||||| | || ||||| | ||||| || |||| |||||||| ||||| Sbjct 89926800 GTGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTAT 89926741 Query 14276 ACCATCACTAGCTGCAAAAAATGCCA 14301 |||||||| |||||||| || |||| Sbjct 89926740 CCCATCACTTGCTGCAAAGAAAGCCA 89926715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479358999219000