Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 383 2e-101
seq1 147 3e-30
seq36523 114 2e-20
seq5641 114 2e-20
>seq51122
Length=156195299
Score = 383 bits (424), Expect = 2e-101
Identities = 650/938 (69%), Gaps = 19/938 (2%)
Strand=Plus/Plus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774
|||| |||||| ||||||| | |||| ||| ||| | || |||| ||||||||
Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
| || || || || || | | || || || |||||||||| | ||| ||||| |
Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243
Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894
|||| || ||||| || | || ||| || |||| |||| ||| || |
Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303
Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954
||| ||||| | || || || ||| ||||| | | |||||||| || || || |
Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363
Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014
| || || | ||| | || || ||||| ||||| || || || | | || ||
Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423
Query 42015 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074
||| ||| | || || | | | | | ||||| |||||||| || || ||||
Sbjct 44959424 CTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44959483
Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134
| ||||| | |||||||||||| ||||| | ||| |||||||||||||| || |||||
Sbjct 44959484 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44959543
Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194
| || || || || ||||| ||||| || ||||| || || |||||||||| |||||||
Sbjct 44959544 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTA 44959603
Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTT 42251
|||| || ||||| | || | || ||||| | | | |||| |||||
Sbjct 44959604 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663
Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311
|||||||| |||||||| || ||||||||||||||||| |||||||| |||| | | |
Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723
Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371
|||| || |||||| | || || || || | |||||||||||||| ||||| |
Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783
Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431
||||||| ||||| || || || || |||||||| | ||| || |||| ||| ||| |
Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843
Query 42432 TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 42491
|| |||||| || | |||||||| || ||||| || ||||| |||||||| || |||
Sbjct 44959844 GACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44959903
Query 42492 ATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG----ATA 42547
||||| |||||||| | | || | ||| || | ||||| || || ||
Sbjct 44959904 GAACATGGGATATAAAATCTCTCTCCT-CGGGCTTCAGGGATTCC---CAGTGCCGAATG 44959959
Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607
|| || || | || || ||||| ||||| || || || || ||||| ||||||||
Sbjct 44959960 TCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44960019
Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645
| |||||||||||| || | || ||||| || |||||
Sbjct 44960020 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057
Score = 178 bits (196), Expect = 2e-39
Identities = 388/580 (67%), Gaps = 42/580 (7%)
Strand=Plus/Minus
Query 42077 CAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 42136
||||| | ||||||||| || ||||| | ||| |||||||| ||||| || ||||| ||
Sbjct 144142936 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144142877
Query 42137 CCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACT 42196
|| | || || ||||| ||||| | ||||| || |||||||||||| | | ||| |||
Sbjct 144142876 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTACTTTCCACT 144142817
Query 42197 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTGTCATGTATCC-ACTTTTG 42252
|||||||| || | ||||||| | || | ||| |||| || |
Sbjct 144142816 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACAGAAG 144142757
Query 42253 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtt 42312
| ||||| | |||||||| || |||| |||||| ||||| |||||||| |||||| | |
Sbjct 144142756 A-CCCAACCTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 144142699
Query 42313 tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT-------- 42364
|||| || |||||||| |||||| || || | ||| ||| ||||||
Sbjct 144142698 CCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCTCCTTATTG 144142641
Query 42365 ------------------GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 42406
||||| |||||||| || || || || ||||| ||||| ||
Sbjct 144142640 AATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAATCCATAGAAGCAG 144142581
Query 42407 CTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATT 42466
|| || |||| ||| |||||| | |||| |||| | || ||||| | | |||
Sbjct 144142580 AAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATC 144142521
Query 42467 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT 42526
|| |||| |||||||| || |||| | ||| |||||||| | |||| || || ||
Sbjct 144142520 CCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCTTTCCTCAGG-CTT 144142462
Query 42527 AATTTATTCCAATCATTG----ATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582
| |||| || || || || || || | || || || | || |||| ||
Sbjct 144142461 CAGGGCTTCC---CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAA 144142405
Query 42583 TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGA 42622
|| | ||| | || ||||||| ||||| |||||||||
Sbjct 144142404 AGAAACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365
>seq1
Length=229942017
Score = 147 bits (162), Expect = 3e-30
Identities = 238/339 (70%), Gaps = 10/339 (3%)
Strand=Plus/Minus
Query 42175 AGAA-AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGG 42230
|||| |||||||| ||||| ||||| |||||||| | || | || ||||| | |
Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970
Query 42231 CACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 42290
| |||| || || | ||||||| |||||||| |||||||| ||||
Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGGT---GTTT 89926916
Query 42291 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAA 42350
| |||| || |||||| | | |||| || |||||| | || || || || | |
Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856
Query 42351 GACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGG 42410
||||||||||||| ||||| ||||||| ||||| || || || | |||||||| ||
Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796
Query 42411 CCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470
| || |||| ||| |||||| | |||||| || | || ||||| || ||||| || |
Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736
Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 42509
|||| |||||||| || |||| ||| | ||||||||
Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697
>seq36523
Length=132107971
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || |||||||| || |||||| |||| |||| || || ||||| || |
Sbjct 66609841 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66609900
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| ||||| |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 66609901 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 66609960
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 66609961 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66610011
Score = 107 bits (118), Expect = 3e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||||||||| |||||||| |||||||||||||| | || |||||||||| | |||
Sbjct 66623542 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66623601
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || |||||||| ||||| || | ||| ||||| | | || || ||||||| ||
Sbjct 66623602 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66623661
Query 72142 TCCAAGTATATGGC 72155
|||| ||| || ||
Sbjct 66623662 TCCAGGTAAATAGC 66623675
Score = 105 bits (116), Expect = 9e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| || |||||||| || || || ||||| || || | | || |
Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 66612781 CTGTTTCTTATACCAT 66612796
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440
|||| || |||||||| || | | | ||| || ||||| || || || | || ||||
Sbjct 66617879 CATAGGTTTCGTATGGGCCCTGCTCCTTGGCAAGGTCACAGCTGGCTTCCAGAGCGCCAT 66617938
Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500
||||||| ||||| || |||| |||||| || || ||||| | || ||||| || |
Sbjct 66617939 AATAAATAGTTTCAAAGATCTGCTTATTCAGTAACTGGGCTTCTGCACTCTCAAAAGGGT 66617998
Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560
| | | || ||||| || ||||| | ||||| || ||||| || || || | || |
Sbjct 66617999 ATCTCATCAGGATAAAAGCATCTGCCAGACCTTGCACCCCAATTCCAATGGGGCGATGGC 66618058
Query 71561 TCTTATTAGA 71570
||||| ||
Sbjct 66618059 GTTTATTTGA 66618068
>seq5641
Length=113028656
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| || ||||| ||||| || ||||| || || || || |
Sbjct 102562830 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 102562889
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 102562890 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 102562949
Query 42207 C 42207
|
Sbjct 102562950 C 102562950
Score = 95.1 bits (104), Expect = 2e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||||| | || || || || | ||||||||||||||| ||||| |||||||| |||||
Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| || || || |||||||| | ||| || |||| ||| |||||| | |||||| ||
Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342
Score = 87.8 bits (96), Expect = 2e-12
Identities = 103/139 (74%), Gaps = 3/139 (2%)
Strand=Plus/Plus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 41774
|||| |||||| |||| || | |||| ||| ||| | || ||||| ||||||||
Sbjct 102560506 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 102560565
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
| || || || || || | || || || || |||||||||||||||| ||| ||||| |
Sbjct 102560566 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 102560625
Query 41835 CCATGAAATCAAACGGATT 41853
|||| || ||||| || ||
Sbjct 102560626 CCATAAAGTCAAATGGGTT 102560644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670622968116600
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