Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq51122 150 3e-31 >seq51122 Length=156195299 Score = 150 bits (166), Expect = 3e-31 Identities = 383/577 (66%), Gaps = 7/577 (1%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || |||||| ||| ||||| || ||| | ||||| || ||||| |||| ||||| ||| Sbjct 44960048 TTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGG 44959989 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || |||||||| || |||||||||||| | | ||||| | | | | || Sbjct 44959988 ACCACGGAAGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCTGAAGCCCGAG 44959929 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| |||| |||||||| || || ||| |||||||| | ||||| || || Sbjct 44959928 ---GAGAGAGATTTTATATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTA 44959872 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAG-AGTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || ||| || || ||||| |||| |||| | ||| |||| | || || Sbjct 44959871 AATGAAAATTTGGTGGAGCGATTTAGTCAAATAGTTCAG-ATTACAGAAGCCCGCTGTTT 44959813 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 44959812 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 44959753 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATGC-TCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||||| ||| | || || |||| || || || || ||| ||| Sbjct 44959752 CACTTACATCAAAGATCC-CAAAGAAAGGGAATTTATCTTCAATGCCATTGAAACGATGC 44959694 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || ||||| | |||| | || ||||| | ||| | || || | | Sbjct 44959693 CTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCT 44959634 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || ||||| || ||||| ||| |||||||||| ||| ||||| Sbjct 44959633 ATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCGTCTTCTTTTCCGGTTCTTTTG 44959574 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | | || || ||||||||||| || |||| ||||| || || ||| || || Sbjct 44959573 CATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAAC 44959514 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 |||| |||| ||||| |||||||||| ||||| Sbjct 44959513 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGC 44959477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740489186526600