Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 2e-11 >seq1 Length=229942017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATC 43968 ||||||| || || ||| |||||| || || || || || | | || || |||| Sbjct 221679908 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGC-CATC 221679966 Query 43969 GTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC 44028 |||| ||||| || |||||||||| || |||||||| | || | ||| || || || Sbjct 221679967 CTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTC 221680026 Query 44029 TGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGT 44088 | |||||| |||||| | ||| || || ||||| || || | || || || Sbjct 221680027 TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 221680086 Query 44089 TTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 ||| || || | ||||||||||| || ||||||| Sbjct 221680087 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGT 221680121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354511531767180