Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq51122 269 2e-67 seq1 107 2e-18 seq25851 96.9 3e-15 seq5641 82.4 7e-11 >seq51122 Length=156195299 Score = 269 bits (298), Expect = 2e-67 Identities = 587/870 (67%), Gaps = 19/870 (2%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| |||| ||||| | ||||| ||||| || |||| | |||||||| ||| Sbjct 44959191 TGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTCAGT-----GAAATATTCTCC 44959245 Query 12923 ATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAA 12981 ||||| || || || | | | | | | || | | |||| | ||| || | | Sbjct 44959246 ATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCC-AGTTCCAGCATAAG 44959304 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || |||||||| ||||| || ||||||| | | || ||||| || || | || Sbjct 44959305 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCTT 44959364 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 ||||||| || || || | || | | |||||| | ||| || | ||||| ||| || Sbjct 44959365 CACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTC 44959424 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATC 13161 ||| | | | ||| ||| | | || || || ||||||| || |||||||| Sbjct 44959425 TCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44959484 Query 13162 ACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAG 13221 |||||| || || |||||||| || || || || || ||||| || || || ||||| | Sbjct 44959485 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44959544 Query 13222 CCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAAC 13281 |||||||| || | ||| ||||| | ||||| ||||| ||||| || | ||||| || Sbjct 44959545 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTAC 44959604 Query 13282 TGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTC 13340 ||| || || |||| |||| | ||||||||| ||| | ||| | | ||||| Sbjct 44959605 TGCAGCGAAGGCTA-CAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 |||||| | ||| || | || || || ||| |||| || || || || | | | | Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 |||| || ||| || ||||| || || | | ||||||||||| ||||| | Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT-TCG 13519 | |||||||| || |||||||| ||||| ||||| | || |||| | ||||||| | Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843 Query 13520 GAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCA 13579 || | ||||| || | || ||||| || ||||| || ||||| || ||||| ||| | Sbjct 44959844 GACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 44959902 Query 13580 AGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTGGAAA 13635 || | || ||||| | | | || | ||| | | | ||| | ||| Sbjct 44959903 AGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCCGAAT 44959958 Query 13636 ATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 || || || | || ||||| || |||||| || ||||| | |||||||||||||| Sbjct 44959959 GTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44960018 Query 13696 CATCCATATATCCTTATAAACAATGGGAAA 13725 | ||| ||||| | || | ||||| || Sbjct 44960019 CTGCCAGATATCATGGTACTCGATGGGGAA 44960048 >seq1 Length=229942017 Score = 107 bits (118), Expect = 2e-18 Identities = 218/319 (68%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTT 13323 || || || ||||| ||||| ||||| |||| |||| | ||||||||| ||| | ||| Sbjct 89927024 AAGAAGATACCTTCCACTGCAGCAAAGGCTA-CAACACATTCACCATAGGTAGCCTCTTT 89926966 Query 13324 ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT-TTTCTA 13382 | | || || | |||||| ||||| || | | || || | | |||| | Sbjct 89926965 GTCCCCAATACAACTCAAGGCCCAATTTGCCTTCT---TGACACA----AGGTGTTTCAA 89926913 Query 13383 TTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC 13442 | | ||| || | | | | |||| || ||| || ||||| || || | | | Sbjct 89926912 TGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGAC 89926853 Query 13443 TATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCT 13502 |||||||||| ||||| | |||||||| || |||||||| |||| ||||| || | Sbjct 89926852 TATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGGCTT 89926793 Query 13503 CTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCAC 13562 ||| | ||||||||| | ||||| || | |||||||| || |||||||| |||| Sbjct 89926792 CTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCATCAC 89926733 Query 13563 TAGCAGCaaaaaaaGCAAG 13581 | || ||||| ||||| || Sbjct 89926732 TTGCTGCAAAGAAAGCCAG 89926714 >seq25851 Length=153482349 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 108797160 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 108797219 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || ||||| | Sbjct 108797220 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 108797279 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 108797280 CCACCACTCTTTCCCC 108797295 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 108786596 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 108786655 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 108786656 ATAAAATCAAAAGGATTTT 108786674 >seq5641 Length=113028656 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 102565230 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 102565288 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 102565289 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 102565327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430659181382070