Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 >seq1 Length=229942017 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 43407675 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 43407734 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || || | || |||||||| ||||| || ||||| ||||| || || Sbjct 43407735 CCCCAAGCTGAGAACCAAGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAC 43407794 Query 128994 CTCAAAACGCT 129004 || || || || Sbjct 43407795 CTGAAGACCCT 43407805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||| | ||||| |||||||||||||| ||||| |||||||||||||||||| | ||||| Sbjct 43410204 AGGCATCTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 43410263 Query 129164 GAC 129166 ||| Sbjct 43410264 GAC 43410266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447405995989200