Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq5024 183 2e-41 >seq5024 Length=2733 Score = 183 bits (202), Expect = 2e-41 Identities = 201/260 (77%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 23137 CCCGGCATCCAACGCCATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAG 23196 ||||||||||| |||||||| |||||||||||| ||||| || ||||| | | ||| Sbjct 10 CCCGGCATCCACATCCATTCATCGCCATATCAATG-TTTTCGGGCGCGTATCAGAATGAA 68 Query 23197 AAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCT 23256 |||| | ||||| || ||| | | |||| | || | |||||||||||||||||| ||| Sbjct 69 AAGCTGAGTAAGGAAATGGCAATGGGCATGATGTAGGTCAGTGAGAGCAGAGATAGAGCT 128 Query 23257 GATGTCCGGCGGTGCT--TTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGG 23314 | || ||||||| ||| | | |||| ||||| ||||||||||||||| |||| Sbjct 129 CTT-TCAGGCGGTGGCAGTTTAACAT--CGCAACACCCTGTCAGTAGCTGAACATCAGGG 185 Query 23315 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACAC-CATCATACACTAAATC 23373 |||| ||||||| |||| |||||||||| ||| || | ||||| |||| | |||| ||| Sbjct 186 ACAGTTGATAGACACAGCAGCCACTGGATCACATC-AGAACACTCATCCTGCACTTCATC 244 Query 23374 AGTAAGTTGGCAGCATCACC 23393 ||||||| |||| | || || Sbjct 245 AGTAAGTGGGCAACTTCCCC 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303007786392735