Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 179 5e-40
seq28484 132 7e-26
>seq1
Length=229942017
Score = 179 bits (198), Expect = 5e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || |||| |||||| ||||| || |||| || |||||||| |||
Sbjct 63878760 GTCTGGAACAACTGCTCATCACCCCATTCAGGATGCTCCTGTTTAAGCACATCGCATACT 63878701
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| |||||||| || || |||||||| ||||||||||| || |||||
Sbjct 63878700 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACTAGACCAAAG 63878641
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | || | || || || |||| ||||| |||||||| |
Sbjct 63878640 ACCTCCTGCCCCACAGCAAACCGTAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 63878581
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | ||| |||||||| || || ||||| ||||
Sbjct 63878580 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 63878532
Score = 159 bits (176), Expect = 5e-34
Identities = 229/323 (71%), Gaps = 0/323 (0%)
Strand=Plus/Minus
Query 8654 TTGAGGAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTA 8713
|||| ||||| || ||||| | ||| | | || ||||| || || ||||| |
Sbjct 63880804 TTGATAAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 63880745
Query 8714 CAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAG 8773
|||| |||||||| || | ||| | |||| ||| ||| ||||| ||||| || ||
Sbjct 63880744 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 63880685
Query 8774 GTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAA 8833
||||| || |||||||| | || || || || || || |||| || ||||| | |||
Sbjct 63880684 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 63880625
Query 8834 AACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8893
|| || || || | || | ||| ||||||| |||||||| | ||||| ||||||||
Sbjct 63880624 AATGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 63880565
Query 8894 ACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCG 8953
|||| | || | |||| ||||| ||| |||||||| || || || || | ||
Sbjct 63880564 ACCAGAAGGCCAGGATACAGCTCCATAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 63880505
Query 8954 GCAGCGATTTCCTTTTCTCCTGT 8976
|||| |||||||||||||||||
Sbjct 63880504 GCAGACATTTCCTTTTCTCCTGT 63880482
Score = 125 bits (138), Expect = 1e-23
Identities = 149/202 (74%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| ||||| || || ||||| || || |||||| ||| | | | ||
Sbjct 63877600 TCTTACCCCATGGCCCAGCCCGTTGGTGAAAGCTGGCCCTCGCTTATGATCTGACTTGAA 63877541
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| |||||||| || ||| |||| || |||||||| | ||| ||||||||||||||
Sbjct 63877540 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 63877481
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | |||||| ||||||||||| | | ||| || || |
Sbjct 63877480 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 63877421
Query 10208 ttttttACCTGGTGAACGAGAA 10229
|||||||||| || |||||
Sbjct 63877420 CTTTTTACCTGAAAAATGAGAA 63877399
Score = 113 bits (124), Expect = 6e-20
Identities = 119/154 (77%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 10287 TCACCTTTGAC-CCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGC 10345
||||||||||| |||||| ||||| || || || | ||| || ||||| || || |
Sbjct 63876987 TCACCTTTGACACCCAAG-GGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGT 63876929
Query 10346 GTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGAT 10405
||||||||||| || ||||| |||||||||||| ||| ||||||| || ||||| |
Sbjct 63876928 ATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCGTAGTCAGCATTGTAAGT 63876869
Query 10406 GGGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| || ||||||||||||| ||||| |||||
Sbjct 63876868 TGGTGGACTGTCAATCAAATGTGATCTGGCTGAA 63876835
Score = 96.9 bits (106), Expect = 5e-15
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
||||| | |||||| ||||| | ||||| ||||| || | ||||||||| || || |
Sbjct 63879352 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 63879293
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439
| | ||| || |||||||| | || ||| || ||| || || | || ||| |
Sbjct 63879292 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTATTTCTGGTCATGAATTT 63879235
Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499
||| | || |||| || | |||||||||||| | |||||||||| | | ||||
Sbjct 63879234 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 63879175
Query 9500 GATTTTGGTACTGGAA 9515
||||||||||||||||
Sbjct 63879174 GATTTTGGTACTGGAA 63879159
>seq28484
Length=135191526
Score = 132 bits (146), Expect = 7e-26
Identities = 171/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||||||||| ||| ||||| || ||||| || ||||| || |||||||| |||| |
Sbjct 119207738 TCTTGACGATGTTAAAGCCCACCTCGCCGCCAAATGTGCTCGGCTTCCAGTACTCCGGAG 119207679
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || |
Sbjct 119207678 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 119207619
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||| | ||| ||| || |||||| | | | ||| | ||| |||||||
Sbjct 119207618 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGTCCTGGGTAGAACTCCA 119207559
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || |||||||| || | || | || || || || ||||| ||||||
Sbjct 119207558 ACGCATCAATGTCTCCATACAATTCCTCTAACTCTGCTGCCATCTCCTTCTCTCCT 119207503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707979811580400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |