Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 223 4e-53
seq5641 100 3e-16
seq25851 95.1 1e-14
seq1 91.5 2e-13
>seq51122
Length=156195299
Score = 223 bits (246), Expect = 4e-53
Identities = 608/925 (66%), Gaps = 29/925 (3%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || ||||||||||| | ||| ||| ||| | |||||| | ||||
Sbjct 44959125 TTCATTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCC 44959184
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| | || || || || ||||||| | ||| |||
Sbjct 44959185 ATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44959239
Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301
|||||||| |||||||| | || | || | || || |||||||||| |
Sbjct 44959240 TTCTCCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44959298
Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|||| ||| ||||| ||||| || || ||||| ||||| | |||||||| || ||
Sbjct 44959299 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAAT 44959358
Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420
| || ||||| | || | || | || | |||||| || || | | |||
Sbjct 44959359 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAAT 44959418
Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474
||| | | | | |||| ||||| | | ||| | ||||| ||||||||
Sbjct 44959419 TATTTCTCTCACTCTCTCCTCCGATGTTTTGTG----TACCAGG--TGTTTGAACATCAA 44959472
Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534
|| ||||||||||| || ||||| ||||| || || || | |||||| ||||| || |
Sbjct 44959473 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44959532
Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594
|| ||||| ||||| || || | ||| ||||| || ||||| | || ||||||||
Sbjct 44959533 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAA 44959592
Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654
| ||| || || ||||| || || || | |||||||| || |||| ||||| |||
Sbjct 44959593 GACGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCC 44959652
Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714
||||| ||||| | |||||| | || | |||| || || ||||| || ||
Sbjct 44959653 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 44959712
Query 21715 TAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATAC 21772
||||| | || |||| | ||| | ||| |||||||
Sbjct 44959713 --GAAGATAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44959770
Query 21773 ATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAA 21832
|||||||||||||| ||||| || || || || || || || ||||| | || |||| |
Sbjct 44959771 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTA 44959830
Query 21833 CATTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891
||||| | || | |||||| | |||| |||||||||||||| |||||||| ||
Sbjct 44959831 ATCTGAACTATTTGACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 44959889
Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCA 21951
||||| || ||| | || |||||||| || || | | | || |||
Sbjct 44959890 TGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCA 44959949
Query 21952 AT--CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009
| | ||| || || || | || || ||||| || ||||| ||| ||| |||
Sbjct 44959950 GTGCCGAAT--GTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCC 44960007
Query 22010 TTTTTATACATAATCCAGATATCAT 22034
|| |||||||| |||||||||||
Sbjct 44960008 TTCTTATACATCTGCCAGATATCAT 44960032
>seq5641
Length=113028656
Score = 100 bits (110), Expect = 3e-16
Identities = 108/142 (76%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | ||||||||||||||| | || ||||| | ||||| || ||
Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| ||||| || ||||| | || |||||||| ||||| || || |||||||| ||
Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951
Query 21620 ACTAATCGTTCACCGTATGTAG 21641
|| | |||||||| ||| |||
Sbjct 102562952 ACAACACGTTCACC-TATTTAG 102562972
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||||| | ||||
Sbjct 102560502 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 102560561
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||||||||||| ||| |||
Sbjct 102560562 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 102560621
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| |||||||| || ||
Sbjct 102560622 TTCTCCATAAAGTCAAATGGGTTCTC 102560647
>seq25851
Length=153482349
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182
|| |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | |
Sbjct 108786531 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 108786590
Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242
||||| || ||||| ||| || || |||||||| |||||||| || || ||
Sbjct 108786591 AACGCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 108786650
Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267
||||||||||||||| ||||||||
Sbjct 108786651 TTTCCATAAAATCAAAAGGATTTTC 108786675
>seq1
Length=229942017
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825
||||||||||||||||||| | ||||| || || || || || | || ||||| ||
Sbjct 89926854 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGGC 89926795
Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|||| | ||||| || |||||| | ||||||||||||||||||| |||||
Sbjct 89926794 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCATC 89926735
Query 21886 ACTGGCGGCAAAAAATGCCA 21905
||| || ||||| || ||||
Sbjct 89926734 ACTTGCTGCAAAGAAAGCCA 89926715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531491668553400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |