Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq51122 223 4e-53 seq5641 100 3e-16 seq25851 95.1 1e-14 seq1 91.5 2e-13 >seq51122 Length=156195299 Score = 223 bits (246), Expect = 4e-53 Identities = 608/925 (66%), Gaps = 29/925 (3%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || ||||||||||| | ||| ||| ||| | |||||| | |||| Sbjct 44959125 TTCATTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCC 44959184 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| | || || || || ||||||| | ||| ||| Sbjct 44959185 ATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATA 44959239 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| | || | || | || || |||||||||| | Sbjct 44959240 TTCTCCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCC-AG 44959298 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || ||||| ||||| | |||||||| || || Sbjct 44959299 CATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAAT 44959358 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | || | |||||| || || | | ||| Sbjct 44959359 GAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAAT 44959418 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | | | |||| ||||| | | ||| | ||||| |||||||| Sbjct 44959419 TATTTCTCTCACTCTCTCCTCCGATGTTTTGTG----TACCAGG--TGTTTGAACATCAA 44959472 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | |||||| ||||| || | Sbjct 44959473 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAG 44959532 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 44959533 GCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAA 44959592 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 | ||| || || ||||| || || || | |||||||| || |||| ||||| ||| Sbjct 44959593 GACGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCC 44959652 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 44959653 AATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 44959712 Query 21715 TAAAAGATGAttt--ttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATAC 21772 ||||| | || |||| | ||| | ||| ||||||| Sbjct 44959713 --GAAGATAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44959770 Query 21773 ATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAA 21832 |||||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 44959771 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTA 44959830 Query 21833 CATTGAAC-CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGC 21891 ||||| | || | |||||| | |||| |||||||||||||| |||||||| || Sbjct 44959831 ATCTGAACTATTTGACT-AAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 44959889 Query 21892 GGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCA 21951 ||||| || ||| | || |||||||| || || | | | || ||| Sbjct 44959890 TGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCA 44959949 Query 21952 AT--CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009 | | ||| || || || | || || ||||| || ||||| ||| ||| ||| Sbjct 44959950 GTGCCGAAT--GTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCC 44960007 Query 22010 TTTTTATACATAATCCAGATATCAT 22034 || |||||||| ||||||||||| Sbjct 44960008 TTCTTATACATCTGCCAGATATCAT 44960032 >seq5641 Length=113028656 Score = 100 bits (110), Expect = 3e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | || ||||| | ||||| || || Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| || ||||| | || |||||||| ||||| || || |||||||| || Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951 Query 21620 ACTAATCGTTCACCGTATGTAG 21641 || | |||||||| ||| ||| Sbjct 102562952 ACAACACGTTCACC-TATTTAG 102562972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 102560502 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 102560561 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 102560562 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 102560621 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 102560622 TTCTCCATAAAGTCAAATGGGTTCTC 102560647 >seq25851 Length=153482349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 21123 TTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCA 21182 || |||||||||| ||||| || | ||| || |||||| ||| || ||||| | | | Sbjct 108786531 TTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTGGTTTCTGCCATAACTGCAA 108786590 Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||| || ||||| ||| || || |||||||| |||||||| || || || Sbjct 108786591 AACGCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGT 108786650 Query 21243 ATTCCATAAAATCAAATGGATTTTC 21267 ||||||||||||||| |||||||| Sbjct 108786651 TTTCCATAAAATCAAAAGGATTTTC 108786675 >seq1 Length=229942017 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||| | ||||| || || || || || | || ||||| || Sbjct 89926854 ACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGGC 89926795 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || |||||| | ||||||||||||||||||| ||||| Sbjct 89926794 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCATC 89926735 Query 21886 ACTGGCGGCAAAAAATGCCA 21905 ||| || ||||| || |||| Sbjct 89926734 ACTTGCTGCAAAGAAAGCCA 89926715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531491668553400