Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq51122 374 1e-98 seq1 147 3e-30 seq36523 111 2e-19 seq5641 100 4e-16 >seq51122 Length=156195299 Score = 374 bits (414), Expect = 1e-98 Identities = 648/938 (69%), Gaps = 19/938 (2%) Strand=Plus/Plus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTT 32370 |||| |||||| |||||| | |||| ||| ||| | || |||| |||||||| Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 | || || || || || | | || || || ||||| || | | ||| ||||| | Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGTGAAATATTCT 44959243 Query 32431 CCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 32490 |||| || || ||||| | || ||| || |||| |||| ||| || | Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303 Query 32491 ATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 32550 ||| ||||| ||||| || || ||| ||||| | | |||||||| || || || | Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363 Query 32551 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 32610 | || || | ||| | || || ||||| ||||| || || || | | || || Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423 Query 32611 ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 32670 ||| ||| | || || | | | | | ||||| |||||||| || || |||| Sbjct 44959424 CTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44959483 Query 32671 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 32730 | ||||||| |||||| ||||| ||||| | ||| |||||||||||||| || ||||| Sbjct 44959484 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44959543 Query 32731 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 32790 | || || || || ||||| ||||| || ||||| || || |||||||| | ||||||| Sbjct 44959544 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTA 44959603 Query 32791 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTT 32847 |||| || ||||| | || | || ||||| | | | |||| ||||| Sbjct 44959604 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663 Query 32848 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGt 32907 |||||||| |||||||| || ||||||||||| || || || ||||| |||| | | | Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723 Query 32908 ttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAA 32967 |||| || |||||| | || || ||||| | |||||||||||||| ||||| | Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 ||||||| ||||| ||||| || || ||||| || | || || |||||||| ||| | Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 || |||||| || | ||||||||||| ||||| || ||||| |||||||| || ||| Sbjct 44959844 GACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44959903 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----ATA 33143 ||||| |||||||| | | || || || | || ||||| || || || Sbjct 44959904 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAG-GGATTCC---CAGTGCCGAATG 44959959 Query 33144 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 33203 || || || | ||||| |||||| ||||| || || ||||| ||||| |||||||| Sbjct 44959960 TCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44960019 Query 33204 TTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 | |||||| ||||| || | || || || || ||||| Sbjct 44960020 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057 Score = 187 bits (206), Expect = 3e-42 Identities = 386/576 (67%), Gaps = 34/576 (6%) Strand=Plus/Minus Query 32673 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 32732 ||||||| |||||| || || ||||| | ||| |||||||| ||||| || ||||| || Sbjct 144142936 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 144142877 Query 32733 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 32792 || | || || ||||| ||||| | ||||| || ||||||||||| | | ||| ||| Sbjct 144142876 CCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAGGTACTTTCCACT 144142817 Query 32793 GCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 32848 |||||||| || | ||||||| | || | ||| |||| || | Sbjct 144142816 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACAGAAG 144142757 Query 32849 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 32908 | ||||| | |||||||| || |||| ||||||||| || || ||||| |||||| | | Sbjct 144142756 A-CCCAACCTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 144142699 Query 32909 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC--------- 32959 |||| || |||||||| |||||| ||||| | ||| ||| ||||| Sbjct 144142698 CCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTATTTCTCCTTATTG 144142641 Query 32960 -----------------CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCAT 33002 ||||| |||||||| || || ||||| ||||| |||||||| Sbjct 144142640 AATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAATCCATAGAAGCAG 144142581 Query 33003 CTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33062 | || |||||||| |||||| | |||| |||| | || ||||||| | ||| Sbjct 144142580 AAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTATTATC 144142521 Query 33063 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 33122 || |||| |||||||| || |||| | ||| |||||||| | |||| || || | Sbjct 144142520 CCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCTTTCCTCAGGCTTC 144142461 Query 33123 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 33182 || | ||| | || || || || | ||||| || | | |||| || || Sbjct 144142460 AGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCCATCCAGAAAGAA 144142401 Query 33183 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 ||||| | || ||||||| ||||| || |||||| Sbjct 144142400 ACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365 >seq1 Length=229942017 Score = 147 bits (162), Expect = 3e-30 Identities = 238/339 (70%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 32771 AGAA-AAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGG 32826 |||| ||||| || ||||| ||||| |||||||| | || | || ||||| | | Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970 Query 32827 CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 | |||| || || | ||||||| |||||||| |||||||| ||| | Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTCTTG---ACACAAGG---TGTTT 89926916 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || | || |||||| | | |||| || |||||| | || || ||||| | | Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 ||||||||||||| ||||| ||||||| ||||| ||||| || | ||||| || | Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 | || |||||||| |||||| | |||||| || | || |||||||| ||||| || | Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT 33105 |||| |||||||| || |||| ||| | |||||||| Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq36523 Length=132107971 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 66609841 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 66609900 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || |||||||| ||||| || || || || || ||||| || | || || | Sbjct 66609901 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACAGTTT 66609960 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 66609961 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 66610011 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 66612661 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 66612720 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 66612721 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 66612780 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 66612781 CTGTTTCTTATACCATA 66612797 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 66623538 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 66623597 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 66623598 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 66623657 Query 63187 CGGTTCCAAGTATATGGC 63204 || |||| ||| || || Sbjct 66623658 AGGCTCCAGGTAAATAGC 66623675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 66640842 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 66640901 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 66640902 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66640961 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 66640962 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 66641007 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 ||||| | ||| | || | || || ||||| || | || || ||||| ||||||||| Sbjct 66634562 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGTGAAGCATGAGTAAAC 66634621 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 || | |||||||| ||||| || |||||||| |||| || || || || || || Sbjct 66634622 CACCTCTCAGAAAGAAGATTATATGTCTCAATTGCTGCATCAATGTCTTCTTTGTGGATC 66634681 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 || || | || | ||| ||||| || || ||||||||| Sbjct 66634682 CCAACAGATACTCTCATCAACATATGTTGTGGTCTTTCA 66634720 >seq5641 Length=113028656 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 32921 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 32980 |||||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282 Query 32981 CATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33040 ||||| || || ||||| || | || || |||||||| |||||| | |||||| || Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633144618186000