Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq37270 122 8e-23 seq28484 91.5 1e-13 seq42212 82.4 7e-11 >seq37270 Length=136387465 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| ||||| ||||||| |||| |||||| | | Sbjct 127297353 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGT 127297294 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| || || ||||| || || |||||||| Sbjct 127297293 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAG 127297234 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||||||||| ||||| | ||||||| ||| || || || ||||| Sbjct 127297233 CAGAGGTTGATTTTTGCCGGGAAACAGCTGGAAGATGGTCGTACCCTGTCTGACTACAAC 127297174 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | ||||| | || ||||| || Sbjct 127297173 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 127297127 >seq28484 Length=135191526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/236 (69%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 39947514 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 39947455 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | || || |||| ||| ||||| || || || ||||||||||| Sbjct 39947454 GACACCATTGAGAATGTCAATGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGACCA 39947396 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || |||||||||||||| | || |||| ||||| | || ||||| Sbjct 39947395 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTACAA 39947336 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || ||| | |||| || || | ||||| | || |||| || |||||| Sbjct 39947335 CATCCAGAAACAGCCCACCCTGCACCTGGTGCTGTGCCTGCGAGGTGG-CATTATT 39947281 >seq42212 Length=99152023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || | || || | || || || ||||||| |||| || || | || Sbjct 87790290 AATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTC 87790231 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| || ||| || || ||||| ||||| ||||| || Sbjct 87790230 GGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 87790171 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || ||||| ||||| || ||||||||| || ||| || || ||||| Sbjct 87790170 GCAGAGACTGATCTTTGCTGGCAAGCAGCTAGAAGATGGACGTACTTTGTCTGACTACAA 87790111 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || || || || ||| | ||| | || || || || || Sbjct 87790110 TATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTAGTGGTGG 87790063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433003022281025