Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 271 8e-68
seq1 145 8e-30
seq5641 98.7 1e-15
>seq51122
Length=156195299
Score = 271 bits (300), Expect = 8e-68
Identities = 538/790 (68%), Gaps = 5/790 (1%)
Strand=Plus/Plus
Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
|||| ||| || || ||||| || ||||| || ||| | | | |||||||| || |
Sbjct 44959300 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATG 44959359
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
|| ||||| | || ||||| | ||| || | || || ||| || | | |
Sbjct 44959360 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATT 44959419
Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097
|||||| | ||||| | | || ||| ||||| | | ||| |||| ||||| |||
Sbjct 44959420 ATTTCTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44959479
Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156
|| || |||||||| || |||| || || || | ||||| || || | || ||
Sbjct 44959480 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44959538
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| | ||||||||||||||||||| ||||| || |||||| ||| ||||| || | ||
Sbjct 44959539 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCC 44959598
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
||| || || || || || |||| |||||| || | | || || | |||||
Sbjct 44959599 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44959658
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
|| |||||||| || || ||||| | |||||| | ||||| || || || || |
Sbjct 44959659 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAT 44959718
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| || | || | | |||| ||||| || || || | ||| ||||||||||||
Sbjct 44959719 AAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44959778
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| ||
Sbjct 44959779 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44959838
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
| |||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| ||
Sbjct 44959839 TATTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44959898
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575
| ||| | ||| |||||||| | |||| || || || ||||| | | || |
Sbjct 44959899 AACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGA-A 44959957
Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635
|| || || || || || ||||| ||||| || || || || || || || ||||
Sbjct 44959958 TGTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44960017
Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695
| | ||| || || || || | || || || |||||||| ||| ||||| || | |
Sbjct 44960018 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAAGCGACAGGGGTTTCCTCTCA 44960077
Query 93696 GTAACGGCTC 93705
| | ||||||
Sbjct 44960078 GCAGCGGCTC 44960087
Score = 122 bits (134), Expect = 1e-22
Identities = 379/589 (64%), Gaps = 31/589 (5%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149
||| ||||||| |||||||| || || | || || || | ||||| ||||| |
Sbjct 144142949 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 144142891
Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209
|| || | ||||||| ||||||||||||| ||||| | |||||| ||||||||| |
Sbjct 144142890 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGA 144142831
Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269
| ||| |||||| ||||| || ||| |||||| || | || || | |
Sbjct 144142830 AGGTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCC 144142771
Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329
||||| || ||||| | || || ||||| | ||| || | |||||| || || |
Sbjct 144142770 CAATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCAT 144142712
Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389
| || || | || | || | |||| || |||| || || | ||| || |
Sbjct 144142711 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTATTTA 144142654
Query 93390 TTTC--------------------------AGAATGGACATTCTCCATTGCAATTTGGAA 93423
|||| |||||| | || || || |||||||||||
Sbjct 144142653 TTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAA 144142594
Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483
||| ||||| || | ||| || ||||| ||||||||| |||| || || | ||
Sbjct 144142593 TCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTT 144142534
Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543
||||| | ||| ||||| |||||||||| ||||||| ||||| |||||||||| |
Sbjct 144142533 TTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCT 144142474
Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGAC 93603
|| ||| || || ||||| | | | || || || || || || || | | |
Sbjct 144142473 TTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGC 144142414
Query 93604 AGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652
|||| || || | ||| |||| | ||||| | ||| || || |||
Sbjct 144142413 CATCCAGAAAGAAACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365
>seq1
Length=229942017
Score = 145 bits (160), Expect = 8e-30
Identities = 237/339 (70%), Gaps = 7/339 (2%)
Strand=Plus/Minus
Query 93202 AGaaaaa-aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260
|||| || || ||||||||||| || ||||| || |||| || ||| || | | ||
Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970
Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320
|| | || || | || ||||||| || || ||| | ||||||| ||||
Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGGT---GTTT 89926916
Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380
| || | ||| || || | || | || | |||||| |||||| || || || | |
Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856
Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440
|| ||||||||||||||| || ||||| ||||||||||| | |||||||| |
Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796
Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500
|||| || ||||| |||||||| ||||| ||| || | |||||||| ||||| ||||
Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736
Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539
| ||||||||| ||||||| | | | ||||||||
Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697
>seq5641
Length=113028656
Score = 98.7 bits (108), Expect = 1e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202
||||| | || || | ||||||||||||||||||||| ||||| || |||||| |||
Sbjct 102562859 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCG 102562918
Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||||| || || |||||||| || ||||| || |||| ||||||
Sbjct 102562919 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 102562962
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414
|||| |||||| || || || | ||| ||||||||||||||| | || ||||| ||
Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282
Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474
||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342
Query 93475 TAC 93477
||
Sbjct 102565343 CAC 102565345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556432469633400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |