Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq51122 271 8e-68 seq1 145 8e-30 seq5641 98.7 1e-15 >seq51122 Length=156195299 Score = 271 bits (300), Expect = 8e-68 Identities = 538/790 (68%), Gaps = 5/790 (1%) Strand=Plus/Plus Query 92919 ATAA-TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 |||| ||| || || ||||| || ||||| || ||| | | | |||||||| || | Sbjct 44959300 ATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATG 44959359 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 || ||||| | || ||||| | ||| || | || || ||| || | | | Sbjct 44959360 AGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATT 44959419 Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| | ||||| | | || ||| ||||| | | ||| |||| ||||| ||| Sbjct 44959420 ATTTCTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCA 44959479 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | ||||| || || | || || Sbjct 44959480 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTGGAAAACGTGAGGCCAGG 44959538 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | | ||||||||||||||||||| ||||| || |||||| ||| ||||| || | || Sbjct 44959539 CATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCC 44959598 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||| || || || || || |||| |||||| || | | || || | ||||| Sbjct 44959599 TTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 44959658 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||||| || || || || | Sbjct 44959659 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAT 44959718 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | | |||| ||||| || || || | ||| |||||||||||| Sbjct 44959719 AAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 44959778 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 44959779 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAAC 44959838 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 | |||| ||||| ||| || | ||||||||| ||||| ||||| ||||||||| || Sbjct 44959839 TATTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 44959898 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATA 93575 | ||| | ||| |||||||| | |||| || || || ||||| | | || | Sbjct 44959899 AACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGA-A 44959957 Query 93576 GATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACA 93635 || || || || || || ||||| ||||| || || || || || || || |||| Sbjct 44959958 TGTCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACA 44960017 Query 93636 TATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | | ||| || || || || | || || || |||||||| ||| ||||| || | | Sbjct 44960018 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAAGCGACAGGGGTTTCCTCTCA 44960077 Query 93696 GTAACGGCTC 93705 | | |||||| Sbjct 44960078 GCAGCGGCTC 44960087 Score = 122 bits (134), Expect = 1e-22 Identities = 379/589 (64%), Gaps = 31/589 (5%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTA 93149 ||| ||||||| |||||||| || || | || || || | ||||| ||||| | Sbjct 144142949 GCAAGCAAAGTAACAGTGTAAACCCTCATCAC-TGCTAATAAGTTCATTGGAAAATGTGA 144142891 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 || || | ||||||| ||||||||||||| ||||| | |||||| ||||||||| | Sbjct 144142890 GGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGA 144142831 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | ||| |||||| ||||| || ||| |||||| || | || || | | Sbjct 144142830 AGGTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCC 144142771 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||| || ||||| | || || ||||| | ||| || | |||||| || || | Sbjct 144142770 CAATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCAT 144142712 Query 93330 TAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACA 93389 | || || | || | || | |||| || |||| || || | ||| || | Sbjct 144142711 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTAAT--ATGTGTCAATAAGGAGATTATTTA 144142654 Query 93390 TTTC--------------------------AGAATGGACATTCTCCATTGCAATTTGGAA 93423 |||| |||||| | || || || ||||||||||| Sbjct 144142653 TTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAA 144142594 Query 93424 TCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATT 93483 ||| ||||| || | ||| || ||||| ||||||||| |||| || || | || Sbjct 144142593 TCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTT 144142534 Query 93484 TTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTT 93543 ||||| | ||| ||||| |||||||||| ||||||| ||||| |||||||||| | Sbjct 144142533 TTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCT 144142474 Query 93544 CTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGAC 93603 || ||| || || ||||| | | | || || || || || || || | | | Sbjct 144142473 TTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGC 144142414 Query 93604 AGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGA 93652 |||| || || | ||| |||| | ||||| | ||| || || ||| Sbjct 144142413 CATCCAGAAAGAAACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365 >seq1 Length=229942017 Score = 145 bits (160), Expect = 8e-30 Identities = 237/339 (70%), Gaps = 7/339 (2%) Strand=Plus/Minus Query 93202 AGaaaaa-aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| || || ||||||||||| || ||||| || |||| || ||| || | | || Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | || || | || ||||||| || || ||| | ||||||| |||| Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGGT---GTTT 89926916 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | || | ||| || || | || | || | |||||| |||||| || || || | | Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAG 93440 || ||||||||||||||| || ||||| ||||||||||| | |||||||| | Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796 Query 93441 CTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCAT 93500 |||| || ||||| |||||||| ||||| ||| || | |||||||| ||||| |||| Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736 Query 93501 CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 | ||||||||| ||||||| | | | |||||||| Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq5641 Length=113028656 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| ||| Sbjct 102562859 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCG 102562918 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || |||| |||||| Sbjct 102562919 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACAACACGTTC 102562962 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342 Query 93475 TAC 93477 || Sbjct 102565343 CAC 102565345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556432469633400