Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 152 4e-32 seq28484 140 3e-28 seq23159 134 1e-26 seq40942 118 9e-22 seq10472 118 9e-22 seq25851 111 1e-19 seq37270 102 7e-17 seq43713 100 2e-16 >seq1 Length=229942017 Score = 152 bits (168), Expect = 4e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || ||||| |||| ||||| || || | Sbjct 221680123 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCC 221680064 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || ||||| ||||||||||||||||||||||| || || || Sbjct 221680063 CAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCGCCTGA 221680004 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||| ||||||||| | |||||| || ||| |||| || || Sbjct 221680003 CCAGCAGCGTCTGATATTTGCTGGCAAACAGCTGGAGGATGGCCACACTCTCTCTGACTA 221679944 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||| || ||||| |||||| | || | || ||||| Sbjct 221679943 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCG 221679905 >seq28484 Length=135191526 Score = 140 bits (154), Expect = 3e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 39947516 AGATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 39947457 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || |||| ||||||||||||||||||||||| ||||| || | Sbjct 39947456 GTGACACCATTGAGAATGTCAATGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 39947397 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| |||||||||||||||||| | |||||| | |||| |||| || |||| Sbjct 39947396 AGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTACA 39947337 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||| | ||||| Sbjct 39947336 ACATCCAGAAACAGCCCACC 39947317 >seq23159 Length=157549271 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22206 TACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGA 22265 |||| || | ||||||| || ||||| || || | || || || || |||| || || Sbjct 58765814 TACAGATGCAGAGATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGA 58765873 Query 22266 AGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 || || ||| || ||| || || |||| |||||||||||||||||||| || Sbjct 58765874 GGTCGAGCCCAGTGACACCACTGAGAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCAT 58765933 Query 22326 TCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGT 22385 ||||| || || |||||||| |||||||| ||||||||| | |||||| || |||| | Sbjct 58765934 TCCACTTGACCAGCAACGTCTGATATTTGCGGGCAAACAGCTGGAGGATGACTGCACTCT 58765993 Query 22386 CTCCGATTACAACATTCAAAAAGAATCCA 22414 ||| || | |||||| || ||||| |||| Sbjct 58765994 CTCAGACTGCAACATCCAGAAAGAGTCCA 58766022 >seq40942 Length=108868599 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | || || || |||| ||||| || | ||| Sbjct 58756434 AGATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTTGAGGTCAAGCCCA 58756493 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| | | || ||||| |||||||| |||||||||||||| ||||| || | Sbjct 58756494 CTGACACCATTTAGAATGTCAAAGCCAAAATTCAGGACAAGGAGGGTATCCCACCTGACC 58756553 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| |||||||| || |||||| | ||||| || ||| |||| | |||| Sbjct 58756554 AGCAGCATCTGATATTTGCTGGGAAACAGCTGAAGGATGGCCACACTCTCTCAGGCTACA 58756613 Query 22397 ACATTCAAAAAGAATCCACCATA 22419 |||| || ||||| |||||| || Sbjct 58756614 ACATCCAGAAAGAGTCCACCCTA 58756636 >seq10472 Length=202140232 Score = 118 bits (130), Expect = 9e-22 Identities = 147/200 (74%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||| ||| || ||||| || || | || || || || | |||||||| || || | | Sbjct 119681605 AGACGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATAACTCTTGAGGTCGAGCCAA 119681546 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| | || || ||||| ||||||||||||||||||| ||| ||||| || | Sbjct 119681545 GTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGG-TATCCCACCTGACC 119681487 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||||||||||||| | |||||| || || |||| || |||| Sbjct 119681486 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGAGGATGGTCGAACTCTCTCAGACTACA 119681427 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| | ||||| |||||| Sbjct 119681426 ACATCCGGAAAGAGTCCACC 119681407 >seq25851 Length=153482349 Score = 111 bits (122), Expect = 1e-19 Identities = 93/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||| ||||||||||| || ||||| || || || ||||| ||| |||| |||||| Sbjct 130907157 AAAATTCAGGACAAGGAGGGCATCCCACCTGACCAGCAGCGTCTGATACTTGCGGGCAAA 130907216 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| |||||| |||| || |||||||| || ||||| |||||| Sbjct 130907217 CAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACC 130907270 >seq37270 Length=136387465 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || | || ||||| || || ||| Sbjct 127298038 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTAGAGCCCAG 127297979 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||||| ||| || || ||||||||||| ||||| || ||||| Sbjct 127297978 TGACACCATTGAGAATGTCAAAGCAAAGATCCAGGACAAGGAGGGCATTCCTCCTGATCA 127297919 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | | || ||||| || || ||| | || ||| |||||| |||| || ||||| Sbjct 127297918 GCAAAGGTTGATCTTTGCGGGAAAGCAGCTGGAAGATGGACGCACCCTCTCTGACTACAA 127297859 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 127297858 CATCCAGAAAGAGTCTACC 127297840 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || ||||| || |||| || || ||||| ||| Sbjct 127298721 ATGCAGATCTTCGTGAAGACTCTGACTGGTAAGACCATCACCCTCGAGGTGGAGCCCAGT 127298662 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||| ||||| || || || || || || Sbjct 127298661 GACACCATCGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCAG 127298602 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | || ||| |||||| | || ||||||||| Sbjct 127298601 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTACAAC 127298542 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 127298541 ATCCAGAAAGAGTCCACC 127298524 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 127297126 GATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 127297067 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || ||||| || || || Sbjct 127297066 TGACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 127297007 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 127297006 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 127296947 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| || ||||| ||||| | || || || |||| || Sbjct 127296946 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTT 127296908 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || ||||| ||| Sbjct 127298494 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 127298435 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || ||||||||||| || ||||| || || || Sbjct 127298434 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 127298375 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || ||| | || ||| |||||| | || |||||||| Sbjct 127298374 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTACAA 127298315 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 127298314 CATCCAGAAAGAGTCTACC 127298296 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| ||||| || || ||| Sbjct 127297582 GATGCAGATCTTCGTGAAGACACTCACTGGCAAGACTATCACCCTTGAGGTCGAGCCCAG 127297523 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||||| ||| || ||||||||||| || || || || || || Sbjct 127297522 TGACACCATCGAGAATGTCAAAGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCA 127297463 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || ||| | || ||| |||||| | || || ||||| Sbjct 127297462 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 127297403 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || ||||| || ||| Sbjct 127297402 CATCCAGAAAGAGTCTACC 127297384 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| || ||||||| || ||||| | | Sbjct 127297810 GATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACTCTCGAGGTGGAGCCTAG 127297751 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | |||| ||| || ||||||||||| || ||||| || || || Sbjct 127297750 TGACACTATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 127297691 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 127297690 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 127297631 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| ||||| Sbjct 127297630 CATCCAGAAAGAGTCCAC 127297613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||||||||| || || | | Sbjct 127298266 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTCGAGCCTAG 127298207 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | |||| ||| || || ||||||||||| ||||| || || || Sbjct 127298206 TGACACTATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCA 127298147 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| |||||| | || ||| |||||| | || |||||||| Sbjct 127298146 GCAGAGGTTGATCTTTGCCGGAAAACAGCTGGAAGATGGTCGCACCCTGTCTGATTACAA 127298087 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || ||||| || || Sbjct 127298086 CATCCAGAAAGAGTCTAC 127298069 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22292 ATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATAT 22351 || ||||| ||||| |||||||||||||| || | || || || || |||| |||| Sbjct 117603089 ATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCTGCCTGACCAGCAGTGTCTGATAT 117603030 Query 22352 TTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAAT 22411 ||| ||||||||| | |||||| || || |||| || || ||||| || ||||| | Sbjct 117603029 TTGTGGGCAAACAGCTGGAGGATGGCCACAGTCTCTCAGACTAGAACATCCAGAAAGAGT 117602970 Query 22412 CCACC 22416 ||||| Sbjct 117602969 CCACC 117602965 >seq43713 Length=77800216 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || || || |||| ||||| || || ||| Sbjct 35284626 AGATGTGGATCTTTGTGAAGACCCTCACAGGCAATACCATCACCCTTGAGGTCGAGCCCA 35284567 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || || || ||||| ||||||||||||||| |||| || | ||| || | Sbjct 35284566 GTGATGCCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGTAGGGCATCCTACCTGACC 35284507 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| |||||| ||||||||| | ||||| || ||| ||| || |||| Sbjct 35284506 AGCAGTGTCTGATATTTCAGGGCAAACAGCTGAAGGATGGCCACACACTCTTAGACTACA 35284447 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || ||||| |||||| Sbjct 35284446 ACATCCAGAAAGAGTCCACC 35284427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419413221707275