Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq42212 105 5e-18 seq1 89.7 4e-13 seq25851 87.8 1e-12 seq20726 82.4 5e-11 >seq42212 Length=99152023 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || || ||||| | ||||| || ||||| ||| | || ||| | Sbjct 87790293 CAAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACC 87790234 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || ||| | | || | ||| || || ||||| || || | ||| | Sbjct 87790233 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 87790174 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || |||||||| |||||||||||||| || ||||||||| | ||| || | || || Sbjct 87790173 TCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTAGAAGATGGACGTACTTTGTCTGACTA 87790114 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 87790113 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 87790078 >seq1 Length=229942017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || ||| | Sbjct 142062509 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTCGAACC 142062450 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG---TGTACCTGT 21946 | | || ||| | | || | ||| || || ||||| || || | | |||| Sbjct 142062449 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTG- 142062391 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 | || | |||||| |||||||||||||| || || |||||| | ||| || | || Sbjct 142062390 --ATCAGCGGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGA 142062333 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||| ||||| |||||||||||| Sbjct 142062332 CTACAATATTCAAAAGGAGTCTACTCTTCAT 142062302 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || | ||||| | ||||| || ||||| ||| | || || | Sbjct 142066580 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTCAAACC 142066521 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGG---TGTACCTGT 21946 | | || ||| | | || | ||| || || ||||| || || | | |||| Sbjct 142066520 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCTTCCTG- 142066462 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGA 22006 | || |||||||| |||||||||||||| || || |||||| | ||| || | || Sbjct 142066461 --ATCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGA 142066404 Query 22007 TTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||||||||| ||||| |||||||||||| Sbjct 142066403 CTACAATATTCAAAAGGAGTCTACTCTTCAT 142066373 >seq25851 Length=153482349 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||||||||| || || || ||||| | | ||| || ||||| ||| | | ||| | Sbjct 83238414 CAAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCAAGGTTGAACC 83238473 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAA 21949 | | || | | | | || | ||| || || ||||| || || | ||| | Sbjct 83238474 CTCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTCA 83238533 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 || |||||||| |||||||||||||| || || |||||| | ||| || | || || Sbjct 83238534 TCAGCAGAGACTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTA 83238593 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||| ||||| |||||||||||| | || || Sbjct 83238594 CAATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 83238629 >seq20726 Length=174210431 Score = 82.4 bits (90), Expect = 5e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||||| |||||||||||||| ||||| |||||| | ||| || | || ||| Sbjct 115806397 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 115806456 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 | |||||| ||||| |||||||||||| | || || Sbjct 115806457 AGTATTCAAAAGGAGTCTACTCTTCATTTTGTGTT 115806491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357856221508390