Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq51122 167 4e-36 >seq51122 Length=156195299 Score = 167 bits (184), Expect = 4e-36 Identities = 459/692 (66%), Gaps = 25/692 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| ||||||||| || ||| ||||||| | Sbjct 44960042 ATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACG 44959983 Query 42345 GAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 || ||| | |||||| ||||||||| |||| |||||| || ||| | ||| | | Sbjct 44959982 GAAGAGGTGGACCTGTCCAAGGACATTCGGCA--CTGGGAATCCCTGAAGCCCGAGGA-G 44959926 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | |||| ||||| || || ||| |||||||| |||| Sbjct 44959925 AGAGATTTTATATCCCATG--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 44959868 Query 42460 AGAACCTGGCCACCAGGTTCA-TGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCT 42516 | || ||| | || | | ||| || | ||| ||| || || ||||| |||| Sbjct 44959867 AAAATTTGGTGGAGCGATTTAGTCAAATAGTT-CAGATTACA--GAAGCCCGCTGTTTCT 44959811 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA--- 42573 | |||||||| || ||||| || ||| | || ||||| |||| | || || | Sbjct 44959810 ATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTG 44959754 Query 42574 ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 |||| |||||| |||||| || | | | ||||| ||||| || ||||||| Sbjct 44959753 ACACTTACATCAAAGATCCCAAAGAAAGGGAATTTATCTTCAATGCCATTGAAACGATGC 44959694 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || ||||||||||||| || ||||| | |||||| | | || || || | Sbjct 44959693 CTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCT 44959634 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 || || | | |||||||| | || || || ||| ||||||| || || | || | Sbjct 44959633 ATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCGTCTTCTTTTCCGGTTCTTTTG 44959574 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | || || |||||||||||| | | ||||||| || ||||| || || || |||| Sbjct 44959573 CATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAAC 44959514 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || ||||| || ||||| | || | || ||||| ||| | ||||| | |||| Sbjct 44959513 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCTTGATGTTC---AAACACC 44959457 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | ||||| | ||| ||||| | || | | || || | | || || |||| | Sbjct 44959456 TGGTACACAAAACATCGGAGGAGAGAGTGAGAGAAATAATTATCAATGCTGTTCAGATAG 44959397 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 | |||| |||||||| || | |||| ||| Sbjct 44959396 AACAGGAATTCCTCACCGAGGCCTTGCCTGTG 44959365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943612826091600