Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq25851 86.0 5e-12 >seq1 Length=229942017 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||| ||| |||| |||||| || || ||| ||| ||||| |||||||| || | Sbjct 221679893 CCACCTTGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 221679952 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | ||| || | || |||| || ||||| ||||||||||| |||||||| || ||| Sbjct 221679953 AGAGTGTGGC-CATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGG 221680011 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | | ||| |||| | | | |||| |||| || | || || | ||| | | || Sbjct 221680012 GATACCCTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCAATGGTGTCACTGGGCTC 221680068 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | || | || || ||||| || || || || ||||||||||| ||||| ||| Sbjct 221680069 GACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 221680123 >seq25851 Length=153482349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 130907299 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 130907240 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || |||| || ||||| |||| |||||| |||||||| || || Sbjct 130907239 AGAGTG-CGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 130907181 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || ||| |||||| |||||| Sbjct 130907180 GATGCCCTCCTTGTCCTGAATTTT 130907157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396764619951070