Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
seq45237 102 9e-17
seq28484 100 3e-16
seq20726 98.7 1e-15
seq45999 95.1 1e-14
seq42212 93.3 5e-14
seq38903 89.7 6e-13
seq37270 89.7 6e-13
seq2292 89.7 6e-13
>seq1
Length=229942017
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053
|||||||||| |||| ||| ||| || || || ||||| |||| ||||| | |
Sbjct 221679905 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCCA 221679964
Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113
|| || ||||| || ||||| ||||| || ||||||||||| | || | | |||||||
Sbjct 221679965 TCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 221680024
Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | ||| |||| | ||||| || | | ||||| || | || || || | |||||
Sbjct 221680025 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 221680083
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|||||||||||| || ||||| |||||||| ||||| ||
Sbjct 221680084 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 221680122
Score = 89.7 bits (98), Expect = 6e-13
Identities = 162/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 41975 TTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTA 42034
||| | ||| | ||| | |||| |||| |||| || ||| || || || |||||
Sbjct 31920955 TTAACAACCACATCTCAGACGCTGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTA 31920896
Query 42035 ATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 42094
|||| ||||| | | || ||||||||| | || || || ||||| | |||||||||
Sbjct 31920895 GTCAGAAAGAGTGAGGCCATCTTCTAGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTC 31920836
Query 42095 GGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA 42154
|| | | || ||||| ||| ||| || || | | | ||||| || |
Sbjct 31920835 GGGGAGGATGCCTTCCTTATCCTGGATATTGGCCTTCACATTTTTGATGGTGTCACTGGG 31920776
Query 42155 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
||||| || | |||||||| ||||| || || ||||| |||||||| ||||||||
Sbjct 31920775 CTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 31920719
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 89856328 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 89856269
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 89856268 TACTAACGAGGA 89856257
>seq45237
Length=73212453
Score = 102 bits (112), Expect = 9e-17
Identities = 163/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | ||||| |||| |||| || ||| || || || ||||| ||||
Sbjct 16727320 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 16727261
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || |||||||| || || || ||||| | ||||||||||| ||
Sbjct 16727260 AAGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 16727201
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || ||||| ||| ||| || || | | | | ||||| || | |||||
Sbjct 16727200 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 16727141
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214
|| | |||||||| ||||| || || || || || ||||| |||||||| ||
Sbjct 16727140 CTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTTGAC 16727087
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | ||| | |||| |||| || |||||| || || ||||| ||||
Sbjct 16727548 ACCACCTCTCAGACGTAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 16727489
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || || |||||||| || || || ||||| | ||||||||||| ||
Sbjct 16727488 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGG 16727429
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| || || || ||| ||| || || | | | | ||||| || | |||||
Sbjct 16727428 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 16727369
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 16727368 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727321
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 8242361 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 8242420
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 8242421 ATACTAACGAGGA 8242433
>seq28484
Length=135191526
Score = 100 bits (110), Expect = 3e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|| ||||| |||| ||| || || || || ||||| || | ||||| | | ||
Sbjct 39947302 CAGCACCAGGTGCAGGGTGGGCTGTTTCTGGATGTTGTAGTCTGAGAGAGTGCAGCCATC 39947361
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
|| ||||| || || || ||||| || ||||||||||| | ||| | | ||||||||
Sbjct 39947362 CTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT- 39947420
Query 42116 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174
| ||| |||| | |||| || | | ||||| || | || || || | |||||||
Sbjct 39947421 CTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 39947480
Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| |||||||| || ||||| |||||||| |||||
Sbjct 39947481 TCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 39947514
Score = 84.2 bits (92), Expect = 2e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||||||||||||||||||||||||||| | ||||||||||| |||||| ||||||
Sbjct 69725031 AATCGAACCCTGGTCTCCCGCGTGACAGGCAGGGATACTCACCACCATACTAACGAGGA 69725089
>seq20726
Length=174210431
Score = 98.7 bits (108), Expect = 1e-15
Identities = 69/79 (87%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 28375080 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 28375021
Query 57065 TATACTACCGAGGATTGAA 57083
||||||| |||||| ||||
Sbjct 28375020 TATACTAACGAGGAATGAA 28375002
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | |||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 28480789 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGTGGGGATACTCACCACT 28480848
Query 57066 ATACTACCGAGGA 57078
|||||| | ||||
Sbjct 28480849 ATACTAACAAGGA 28480861
>seq45999
Length=10578
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| ||||| | ||||| |||| ||||| || |||||| || || ||| | ||||
Sbjct 9049 ACCACCTCTCAGACGCAGGACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGCAGTCAGA 8990
Query 42041 CAGAGT-CCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099
||||| |||| | || || |||||||| || || || ||||| | ||||||||||| |
Sbjct 8989 AAGAGTACCGC-CATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 8931
Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159
| | || || || ||| ||| || || | | | | ||||| || | ||||
Sbjct 8930 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 8871
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
| || | ||||| || ||||| || || ||||| || ||||| |||||
Sbjct 8870 CTTCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8822
>seq42212
Length=99152023
Score = 93.3 bits (102), Expect = 5e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055
|||||| | ||| | || |||||||||||||||||| |||| || ||| || | ||
Sbjct 87790077 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87790136
Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115
||||||||||| ||||| || || |||| |||||| || | || | | ||||| ||
Sbjct 87790137 TTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 87790196
Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175
| ||| || || | | | | ||| || | ||| || |||| ||||||||
Sbjct 87790197 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87790256
Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| ||||| || || || | || || ||||||||
Sbjct 87790257 CTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 87790292
>seq38903
Length=2460
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1928 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1869
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 1868 TACTAACGAGGA 1857
>seq37270
Length=136387465
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 97210652 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 97210593
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 97210592 TACTAACGAGGA 97210581
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 127312949 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127313008
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 127313009 TACTAACGAGGA 127313020
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 127326429 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 127326488
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 127326489 TACTAACGAGGA 127326500
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 99755080 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 99755021
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 99755020 ATACTAACGAGGA 99755008
>seq2292
Length=10672
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 5746 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5805
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 5806 TACTAACGAGGA 5817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542794967504400
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