Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 1e-18
seq42212 91.5 1e-13
seq28484 89.7 4e-13
seq49093 82.4 5e-11
seq20726 82.4 5e-11
>seq1
Length=229942017
Score = 107 bits (118), Expect = 1e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||| ||| | || || | || ||||| || ||||| || |||||||| ||
Sbjct 221679891 TGCCACCTTGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 221679950
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| | | || || | ||||||||||| |||||| |||||| ||||| |
Sbjct 221679951 AGAGAGTGTGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCG 221680010
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || || |||||||| ||||||| ||| ||| | || || || || || || |
Sbjct 221680011 GGATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 221680070
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181
| || | ||| |||||||| || || || || || ||||| || ||||| ||||
Sbjct 221680071 CCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTG 221680124
>seq42212
Length=99152023
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | | ||| || || | |||||| ||||| || ||||| || ||||| ||
Sbjct 87790063 CCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 87790122
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | ||||||| || |||||||| | |||| | ||| || || |||
Sbjct 87790123 AAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 87790182
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| ||||||| ||||| ||| ||
Sbjct 87790183 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 87790242
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | ||| ||||| || || || || ||||| | ||||| ||||| ||
Sbjct 87790243 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 87790292
>seq28484
Length=135191526
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
|||||||||||| | | || | || ||||| | | ||| || |||||||| ||
Sbjct 39947286 TGCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGGCTGTTTCTGGATGTTGTAGTCTG 39947345
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| | | | || || | |||||||| || |||||| |||||| ||||| ||
Sbjct 39947346 AGAGAGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 39947405
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || || |||||||| ||||||| || ||| | || || || || || || |
Sbjct 39947406 GGATACCCTCCTTGTCTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGA 39947465
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||| ||||| || || || || || || ||||| || |||||
Sbjct 39947466 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 39947514
>seq49093
Length=62736349
Score = 82.4 bits (90), Expect = 5e-11
Identities = 154/227 (68%), Gaps = 11/227 (5%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| | | ||| || || | |||||| ||||| || ||||| |||| ||| ||
Sbjct 34352642 CCACCACAAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTCGTAGTC---- 34352587
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | ||||| | ||| |||||||| | || | | || || || |||
Sbjct 34352586 AGA-------CATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTTTGCTGATCAGGAGGA 34352534
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| | || ||| ||||| | |||| ||| ||
Sbjct 34352533 ATTCCTTCCTTATCCTGGATCTTGGTCTTCACATTTTCTGTCATATCCGAGGGTTCAACC 34352474
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| |||||||| ||||| || ||||| || ||||| |||||
Sbjct 34352473 TCGAGGGTGATGGTTTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 34352427
>seq20726
Length=174210431
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | | | || || |||||||| ||||| || ||||| || |||| ||
Sbjct 115806506 CCACCACGAAGTTTCAACACAAAATGAAGAGTAGACTCCTTTTGAATACTGTAGTCAGAC 115806447
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | ||||| | ||| |||||||| | |||| | || || || |||
Sbjct 115806446 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 115806387
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| ||||||| |||| |||| |
Sbjct 115806386 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGTTTCAGCC 115806327
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| | ||| ||||| || |||| | | |||| |||||||| ||||| ||
Sbjct 115806326 TTGAGGGTGATGGTCTTCTCTGTAAAACTTTTCACAAAAATCTGCATTTT 115806277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357123971077475
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |