Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq37270 127 2e-24 seq42212 113 4e-20 seq1 105 6e-18 seq25851 95.1 1e-14 seq45237 91.5 1e-13 seq45999 86.0 6e-12 seq20726 82.4 7e-11 >seq37270 Length=136387465 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || |||||||| || |||||| ||| || Sbjct 127298056 CACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTC 127298115 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||||||||| || ||||||| | |||||| || ||||| ||||||||||||||| Sbjct 127298116 CAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 127298175 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | || | ||||| || |||||| || | || | || || Sbjct 127298176 GATCTTTGCCTTGACGTTCTCAATAGTGTCACTAGGCTCGACCTCAAGAGTGATGGTCTT 127298235 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || |||||||| Sbjct 127298236 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 127298265 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || |||||||| || |||||| ||| || Sbjct 127298284 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTC 127298343 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 127298344 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 127298403 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | || | |||||| | ||| || |||| ||| | || || Sbjct 127298404 GATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTT 127298463 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| ||||| || || || || |||||||| Sbjct 127298464 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 127298493 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || || |||||| ||| || Sbjct 127297372 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 127297431 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||| || ||||| ||||| |||||||| Sbjct 127297432 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTG 127297491 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | |||| |||||| | |||||| || | ||| | || | Sbjct 127297492 GATCTT-TGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATAGTCT 127297550 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || || || || || || |||||||| Sbjct 127297551 TGCCAGTGAGTGTCTTCACGAAGATCTGCAT 127297581 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | ||||||||||| || || ||||| || | ||||| ||| || Sbjct 127297828 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCTTC 127297887 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||| || ||||||| | |||||||| ||||| ||||||||||||||| Sbjct 127297888 CAGCTGCTTTCCCGCAAAGATCAACCTTTGCTGATCAGGAGGAATGCCCTCCTTGTCCTG 127297947 Query 127024 GATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| |||| | || | |||||| | ||| || || | ||| | || | Sbjct 127297948 GATCTT-TGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGTAATGGTCT 127298006 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||||| || || || || |||||||| Sbjct 127298007 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 127298037 >seq42212 Length=99152023 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 87790060 GCACCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 87790119 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| |||||||| || ||||| |||||| || ||||||||| ||| Sbjct 87790120 GACAAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGA 87790179 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | || |||| || Sbjct 87790180 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCA 87790239 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| | ||||||||||| Sbjct 87790240 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 87790289 >seq1 Length=229942017 Score = 105 bits (116), Expect = 6e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||||| || | || |||||||| || || ||||| || | ||| | | Sbjct 221679905 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCCA 221679964 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| ||||| | |||| |||||||| || || || || ||||||||| Sbjct 221679965 TCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 221680024 Query 127019 TCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 | | ||| ||| || |||| | || | |||||| | |||||| || | ||| | Sbjct 221680025 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 221680083 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 |||||||| || || || || ||||| ||||||||| Sbjct 221680084 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 221680120 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||||||||| || || || || ||| || ||||| || ||| Sbjct 142062309 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCA 142062368 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || | ||||||| ||| | || || ||||| ||| ||| || ||| Sbjct 142062369 GCAAAGATCAGTCTCCGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 142062428 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | || |||| ||||| |||| ||| | || || || || || ||| Sbjct 142062429 ACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 142062488 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 142062489 TTCACGAAAATCTGCAT 142062505 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| |||||||||||||| || || || || ||| || ||||| || ||| Sbjct 142066380 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCA 142066439 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || ||||||||| ||| | || || ||||| ||| ||| || ||| Sbjct 142066440 GCAAAGATCAGTCTCTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 142066499 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | || |||| | ||| |||| ||| | || || || || || ||| Sbjct 142066500 ACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 142066559 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 142066560 TTCACGAAAATCTGCAT 142066576 >seq25851 Length=153482349 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || |||||| | ||| | |||||||| |||||||||||||| || Sbjct 83238647 GCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCA 83238588 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || ||||| || ||||| |||||| || |||||||| ||| Sbjct 83238587 GACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATGAGGA 83238528 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | | |||| || Sbjct 83238527 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCA 83238468 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || ||| | || || || | || ||||| | ||||||||||| Sbjct 83238467 ACCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCAT 83238418 >seq45237 Length=73212453 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || || |||||| ||||| | ||||||||||||||||||||||| | Sbjct 10340779 GCACCACCACGCGGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCA 10340720 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || || || || ||||| ||||| || |||||||| ||| Sbjct 10340719 GACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGA 10340660 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || | ||| ||| ||| || ||| | | ||| | | || | | || Sbjct 10340659 GGAATTCCTTTCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCTGAAGGTTCA 10340600 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 10340599 ACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10340550 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | |||||| ||| || ||||| || || Sbjct 16727517 GTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCT 16727458 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| |||||||| ||||| || || ||| ||| || ||| Sbjct 16727457 GCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC 16727398 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | ||| || || | ||| | || ||||||||||| || Sbjct 16727397 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 16727338 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 16727337 TTCACGAAGATCTGCAT 16727321 >seq45999 Length=10578 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || | ||||| | Sbjct 9264 CGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 9205 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | | |||||||||||| || ||||| || || Sbjct 9204 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGGGGATGCCTTCTTTA 9145 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || || | | || || |||||| | ||| || || | ||| | Sbjct 9144 TCCTGGATCTTGGCTTTCACATTTTTGATGGTGTCACTGGGCTCCACCTCCAGGGTAATG 9085 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || ||||| |||||||| Sbjct 9084 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 9050 >seq20726 Length=174210431 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | | |||||| ||||| | |||||||| ||||||||| |||| || Sbjct 115806509 GCACCACCACGAAGTTTCAACACAAAATGAAGAGTAGACTCCTTTTGAATACTGTAGTCA 115806450 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || || || || ||||| |||||| || |||||||| ||| Sbjct 115806449 GACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGA 115806390 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | | ||| | || Sbjct 115806389 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGTTTCA 115806330 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | || ||| | || || | || | | |||| |||||||||||||| Sbjct 115806329 GCCTTGAGGGTGATGGTCTTCTCTGTAAAACTTTTCACAAAAATCTGCAT 115806280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475135050728400