Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq37270 84.2 2e-11 >seq1 Length=229942017 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| || ||||| || || || || ||||| || || || || || | ||| Sbjct 221679907 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCCATC 221679966 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| ||||| || || |||||| || |||||||| ||||| || || || || || Sbjct 221679967 CTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTGTC 221680026 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||||||| ||||| || | |||||| | |||||| || || || | || Sbjct 221680027 TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 221680086 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || || ||||| || ||||| Sbjct 221680087 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 221680119 >seq37270 Length=136387465 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || || ||||| || ||||| | ||| | ||| || Sbjct 127298284 CACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTC 127298343 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || | ||||| | |||||||| || ||||||||||| || ||||| Sbjct 127298344 CAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 127298403 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| |||| || | |||||| | ||| || ||||| || | || || Sbjct 127298404 GATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTT 127298463 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || || || || || || || |||||| Sbjct 127298464 GCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298494 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || || || ||||| || || || | ||| | ||| || Sbjct 127297600 CACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTC 127297659 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || ||||| || || | ||||| | |||||||| || ||||||||||| || ||||| Sbjct 127297660 CAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTG 127297719 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| |||| || | || | ||||| || ||| || |||||||| | || | Sbjct 127297720 GATCTTTGCCTTGA-CGTTCTCAATAGTGTCACTAGGCTCCACCTCGAGAGTGATGGTCT 127297778 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || || || || || || |||||| Sbjct 127297779 TACCAGTCAGGGTCTTCACGAAGATCTGCATC 127297810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451655524788600