Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 129 7e-25 seq45237 123 3e-23 seq45999 113 5e-20 seq28484 111 2e-19 seq42212 98.7 1e-15 seq25851 96.9 4e-15 >seq1 Length=229942017 Score = 129 bits (142), Expect = 7e-25 Identities = 162/221 (73%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| |||| || ||| || ||||| |||||||| || |||||| | | Sbjct 221679905 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCCA 221679964 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| || ||||||| ||||||||||| | ||| | | ||||||| Sbjct 221679965 TCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTTG 221680024 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || || || |||| || | | ||||| || | || || || | |||||| Sbjct 221680025 TCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 221680084 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGC 46598 ||||||||||| || || || |||||||| ||||| ||||| Sbjct 221680085 GTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGC 221680125 Score = 102 bits (112), Expect = 9e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 46372 TCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGT 46431 ||| | |||| ||||| |||| || ||| || ||||| |||||||| || ||||| Sbjct 31920943 TCTCAGACGCTGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 31920884 Query 46432 GCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCT 46491 | | | || || |||||| |||| || || || | | ||||||||||| | | || Sbjct 31920883 GAGGCCATCTTCTAGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGAGGATGCC 31920824 Query 46492 CTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCAC 46551 ||||| ||| ||| || ||| | | | ||||| || | ||||| || | Sbjct 31920823 TTCCTTATCCTGGATATTGGCCTTCACATTTTTGATGGTGTCACTGGGCTCCACCTCAAG 31920764 Query 46552 CGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||||| ||||| ||||| || || |||||||| ||||||||| Sbjct 31920763 GGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 31920718 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | ||| ||||||||| ||||||||||| || | ||| || | || || ||| Sbjct 142062300 AGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGC 142062359 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| || || |||| | | |||| || | | | | ||||| ||| |||| Sbjct 142062360 TGCTTGCCAGCAAAGATCAGTCTCCGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATC 142062419 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 || ||| | | | | ||| || | ||| || || | |||||||| || ||| Sbjct 142062420 TTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGGGTGATGGTCTTCCCC 142062479 Query 46568 GTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || ||||| || || || ||||||||| Sbjct 142062480 GTAAGGGTTTTCACGAAAATCTGCATTTTG 142062509 Score = 86.0 bits (94), Expect = 7e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46388 AGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGC 46447 ||||| | ||| ||||||||| ||||||||||| || | ||| || | || || ||| Sbjct 142066371 AGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGC 142066430 Query 46448 TGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATC 46507 |||||||| || || |||| | |||||| || | | | | ||||| ||| |||| Sbjct 142066431 TGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATC 142066490 Query 46508 TTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCC 46567 || ||| | | | | ||| || | || || || | |||||||| || ||| Sbjct 142066491 TTGGCCTTTACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGGGTGATGGTCTTCCCC 142066550 Query 46568 GTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || ||||| || || || ||||||||| Sbjct 142066551 GTAAGGGTTTTCACGAAAATCTGCATTTTG 142066580 >seq45237 Length=73212453 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 16727319 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 16727260 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || ||||||||||| || || || | | ||||||||||| || Sbjct 16727259 AGAGTACGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 16727200 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||| ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 16727199 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16727140 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | |||||||| ||||| || || ||||| || ||||| ||||||||| Sbjct 16727139 TCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTTG 16727089 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | ||||| |||| || |||||| ||||| |||||||| || Sbjct 16727547 CCACCTCTCAGACGTAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAA 16727488 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || || ||||||||||| || || || | | ||||||||||| || Sbjct 16727487 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 16727428 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 16727427 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 16727368 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 16727367 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727321 Score = 105 bits (116), Expect = 8e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 16727776 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 16727717 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | ||||||||| | || Sbjct 16727716 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGG 16727657 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || || |||||| ||| | | | | ||||| || | ||||| Sbjct 16727656 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCAC 16727597 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 16727596 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727549 >seq45999 Length=10578 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||||| ||||| ||||| || |||||| ||||| ||| |||| || Sbjct 9048 CCACCTCTCAGACGCAGGACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGCAGTCAGAA 8989 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || ||||||||||| || || || | | ||||||||||| || Sbjct 8988 AGAGTACCGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 8929 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || || ||| |||||| ||| | | | | ||||| || | ||||| Sbjct 8928 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 8869 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 8868 TCCAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8822 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 9277 GCCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 9218 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| || || || | | |||||| |||| || Sbjct 9217 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGGG 9158 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || || ||| |||||| || | | | ||||| || | ||||| Sbjct 9157 GATGCCTTCTTTATCCTGGATCTTGGCTTTCACATTTTTGATGGTGTCACTGGGCTCCAC 9098 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| ||||| || || |||||||| ||||| Sbjct 9097 CTCCAGGGTAATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 9050 >seq28484 Length=135191526 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | | || |||||| |||| || || || ||||| |||||||| | Sbjct 39947286 TGCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGGCTGTTTCTGGATGTTGTAGTCTG 39947345 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||||| | || || ||||| |||||||| ||||||| ||||||||||| | | Sbjct 39947346 AGAGAGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTG 39947405 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||||||| || || |||| || | | ||||| || | || | Sbjct 39947406 GGATACCCTCCTTGTCTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGA 39947465 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| |||||||| || || || |||||||| ||||| Sbjct 39947466 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 39947514 >seq42212 Length=99152023 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| ||||| | ||| ||||||||| ||||||||||| || | ||| || | || Sbjct 87790077 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 87790136 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||| || || |||| | |||||| || | || | | ||||| || Sbjct 87790137 TTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 87790196 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||| || | ||| || || | |||||||| Sbjct 87790197 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 87790256 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||| || ||||| | || || ||||||||| Sbjct 87790257 CTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTTG 87790293 >seq25851 Length=153482349 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/229 (70%), Gaps = 18/229 (8%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | |||| |||||| |||| || ||| || ||||| |||||||| | Sbjct 130907301 TGCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 130907242 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | |||||||| | || || ||||| ||||| || | ||||| ||||||||||| | | Sbjct 130907241 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTG 130907182 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| ||| | ||| |||| || || |||| || Sbjct 130907181 GGATGCCCTCCTTGTCC-TGA-----ATTTTG-GCGTTGC-----TG-GGCTCAAT---- 130907139 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || || || |||||||| ||||| Sbjct 130907138 -CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 130907091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564803625688200