Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq1 235 7e-57 seq20727 96.9 4e-15 seq20754 87.8 2e-12 seq20726 87.8 2e-12 >seq1 Length=229942017 Score = 235 bits (260), Expect = 7e-57 Identities = 246/323 (76%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||| ||| | || |||||||| ||||| Sbjct 90860885 GTTTCACAAAGCAGCTCGACCCCATTGATGGTGAACGGGATTCTGGGGGAGTCAGTAACT 90860944 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || |||||| |||| |||||||| |||| | ||| || Sbjct 90860945 CTTCCCCTGGAGTTTCCTGCAGGAGAGAAGGTCAACTCCATCACTTGGCTTTGCAATGGA 90861004 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || | || || |||| || || | |||||| | || ||| Sbjct 90861005 ACATCTCTTGCCTTCATAGTACCTCATGAAACCAAAAGTCCAGAAATCCACATGACTAAT 90861064 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 ||||||| ||| |||||||| ||||||| |||||||||||||| ||||| |||||||| Sbjct 90861065 CCGAAACAGGGAAAGCGACTGCACTTCACCCAGTCCTACTCCCTGCAACTCAGCAACCTG 90861124 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||||||||||||| || | |||||||||| ||| || | || ||| | | || | Sbjct 90861125 GAGATGGAAGACACAGGCTTTTACAGTGCCCAGATAGCCACAGACACCTCTGCAAAGCTG 90861184 Query 2178 TCCAGCTACACGCTGAGGATCTT 2200 ||||| ||||| || ||||| || Sbjct 90861185 TCCAGTTACACTCTCAGGATATT 90861207 Score = 214 bits (236), Expect = 2e-50 Identities = 201/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||||| |||||| || || | |||||||||||| || | ||||||| ||| ||| ||| Sbjct 90865882 AACTGAGGAACATACAAGTTACCAATCACAGTCAGCTATTTCAGAATAGGACCTGTGAGC 90865941 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||| ||||| || ||||| |||||| | ||||||| |||| |||| ||||||||||| Sbjct 90865942 TCCAGCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 90866001 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 |||| || || ||| | | |||| |||||||| | ||||||||||| ||||| || Sbjct 90866002 TGGGAAACACACTTTCAAGTCAGCCAAACCTCACTATCTCCTGGGACCTCAGGATTTCCA 90866061 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||| ||||||| ||||| || || || ||||| || ||| | || ||| | |||| Sbjct 90866062 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGTAATTTATCCTTCTCTGTCT 90866121 Query 2446 CGGCCCAGAAGCTGTG 2461 | ||||||||||| || Sbjct 90866122 CTGCCCAGAAGCTTTG 90866137 Score = 199 bits (220), Expect = 5e-46 Identities = 232/313 (74%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 1889 CAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGCCCCTGGA 1948 |||||||| ||| |||| ||||||||||| || |||||||| ||||| || |||||||| Sbjct 88918634 CAGCTCCAACCCCATGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACTCTTCCCCTGGA 88918575 Query 1949 ATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACCTCCATCGC 2008 ||||| || || |||| |||| ||| |||||| |||| | || || || || | || Sbjct 88918574 GTTTCCTGCAGGAGAGAGGATCCAGTTCATCACTTGGCTTTGCAGTGGAACATCTTTTGC 88918515 Query 2009 CTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAATCCGAAACTGGG 2068 ||| || | |||| || | ||| || || | ||| || | || |||||||| | Sbjct 88918514 CTTCATAGAACCCTATGAAGGCAAAAGTCCAAAAATCTACGTGACTCATCCGAAATGGCA 88918455 Query 2069 CAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTAGAGATGGAAGA 2128 |||||||| | ||| || ||||||||||||| || || ||||| || |||||||||| Sbjct 88918454 AAAGCGACTGAGCTTTACCCAGTCCTACTCCCCGCAGCTCAGCAATCTGTAGATGGAAGA 88918395 Query 2129 CACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTTTCCAGCTACAC 2188 ||| || | |||||||||| ||| || | |||||| | | || ||||| ||||| Sbjct 88918394 CACAGGCTTTTACAGTGCCCGGATAGCCACAGAGACCTCTGCAAAGCCGTCCAGTTACAC 88918335 Query 2189 GCTGAGGATCTTC 2201 |||||||| ||| Sbjct 88918334 TCTGAGGATATTC 88918322 Score = 104 bits (114), Expect = 3e-17 Identities = 74/85 (87%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716 ||| |||| ||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 90870762 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 90870821 Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741 ||||| |||||||||||||||||| Sbjct 90870822 CTAAGCAAATGGAATTATGGTTGAC 90870846 >seq20727 Length=1646321 Score = 96.9 bits (106), Expect = 4e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| ||||||||||||||| || || | ||| Sbjct 793931 CCCTCGTGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACCGCT 793990 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || |||||||| ||||| | || || | |||| || || ||| Sbjct 793991 GCCCACTTCTGGAAGGTTCCATCTCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGA 794050 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 794051 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 794110 Query 14358 GCCCAGCACCGTAAAGTAGTCTCGTG 14383 |||||||| | | ||||||| || Sbjct 794111 GCCCAGCATCTCAGGATAGTCTCATG 794136 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 780157 CCCTCATGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 780098 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| |||| || || |||||| | ||||| | || || | |||| || || || Sbjct 780097 GCCCA-CTTTGGAAGGTTCCATCT-CTGCTGGCCTGGTCTCCACAAGCTCCGTGTCCTGG 780040 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | || || || || || || | ||| || | | | || || || || || || |||| Sbjct 780039 GTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 779980 Query 14358 GCCCAGCACCGTAAAGTAGTCTCGTG 14383 |||||||||| | || ||||| || Sbjct 779979 GCCCAGCACCTCAGGGTGGTCTCATG 779954 >seq20754 Length=29380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || || || || || | ||||||||||| ||||||||||||||| || || | |||| Sbjct 26241 CCCTCGTGCTGCACATGGCATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCT 26182 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || ||||| | || || | |||| || || || Sbjct 26181 GCCCACTTCTGGAAGGTTCCATCGCCTGCTGGCCTGGTCTCCACAAGCTCGGTGTCCTGG 26122 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 | | || || | || || | ||| || | | | || || || || || || |||| Sbjct 26121 GTCAGGTCCTCCCTATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 26062 Query 14358 GCCCAGCACCGTAAAGTAGTCTCGTG 14383 |||||||||| | |||||||| || Sbjct 26061 GCCCAGCACCTCAGGGTAGTCTCATG 26036 >seq20726 Length=174210431 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||||| || ||||| || || | || |||||||| ||| ||||||||||| || | Sbjct 31201258 CGGGTAGCCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCA 31201199 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | | |||| |||| || || || || ||||| || || || | || || | |||||| Sbjct 31201198 CCACAGCTGCCCACTTCTGGAAGGTTCCATCCCCGGCAGGCCTGGTCTCCACAAGCTCTG 31201139 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | | || | || || || || || || | ||| || | | | || || || || || | Sbjct 31201138 TGTACTGGTTCTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGA 31201079 Query 14350 AACCCAAAGCCCAGCACC 14367 | |||| |||||||||| Sbjct 31201078 AGCCCAGGGCCCAGCACC 31201061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628799163228600