Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq51122 255 7e-63 seq1 154 2e-32 seq5641 111 2e-19 seq25851 107 2e-18 >seq51122 Length=156195299 Score = 255 bits (282), Expect = 7e-63 Identities = 518/762 (68%), Gaps = 13/762 (2%) Strand=Plus/Plus Query 36876 ACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGT 36935 |||||||| | ||||| || || |||| || || || || || ||||||| ||| Sbjct 44959179 ACTCCCATCCTCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGTCTTTC-----AGT 44959233 Query 36936 GATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAG--TACTACATGATA 36993 || ||||| |||||||| |||||||| | | || | | | | ||| | | Sbjct 44959234 GAAATATTCTCCATAAAGTCAAATGGGCTC--TCTACTCCGAAAACCTTGCTAAAACCCA 44959291 Query 36994 ATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTA 37053 |||| || ||| || || || ||||| || ||||||| |||||| | | || | Sbjct 44959292 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCA 44959351 Query 37054 TACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCAT 37113 | ||||| || || || || | || || || ||| | |||||| ||||||| Sbjct 44959352 TCCCAATGAGCTTCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCAT 44959411 Query 37114 CTTTAACTATAT-TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAAT 37172 ||| ||| | | || | || || | | || | | | | ||| |||| Sbjct 44959412 TGATAATTATTTCTCTCACTCTCTCCTCC-GATGTTTTGTGTACCAGGTGTTTGAACATC 44959470 Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || ||||||||||| |||||||| |||||||| || || | |||||| ||||| || Sbjct 44959471 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44959530 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 | || ||||| |||| ||| || | ||| ||||| | ||||||||| || |||||| Sbjct 44959531 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAG 44959590 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || | ||||| ||||| || || ||||||| |||| ||| | || | | || Sbjct 44959591 AAGACGCCTTCTACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCC 44959650 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 |||||| | |||||||||||| || ||||| || |||||||| || Sbjct 44959651 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 44959710 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||| ||| | |||||| |||| | || ||||| ||||| || | ||||||| Sbjct 44959711 TTGAAGATAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATAC 44959770 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 |||||||| || || ||||| || || || || || ||||| ||||| | ||||| | | Sbjct 44959771 ATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG-T 44959829 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| ||||| | | ||| | || | || |||||||| ||||| |||||||| || Sbjct 44959830 AATCTGAACTATTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGC 44959889 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||||| | ||||||| |||||||| ||| || || Sbjct 44959890 TGCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTC 44959931 Score = 141 bits (156), Expect = 1e-28 Identities = 326/488 (67%), Gaps = 35/488 (7%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| || | ||| ||||| ||||||||| ||||||||||| Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA--ACTATAATCAG 37353 ||| ||| ||| ||||| ||| ||| |||| | | | | | | || | || Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGT-TCTCCATGGGTAACGTCTTTGTTC-C 144142771 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 |||||| |||| ||||||| || ||||| | ||||||||||| || | Sbjct 144142770 CAATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACAGGC-ATTGTTTCAATGGCAT 144142712 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | |||||||| | |||||| ||||| ||| ||| || ||||| || | | ||| | Sbjct 144142711 TGAAGAGAAATTCCCTTTCTTTGTTATCT-TTA-ATATGTGTCAATAAGGAGATTATTTA 144142654 Query 37474 TTTC--------------------------AGAGTGAATATTTTCAATAGCTATCTGAAA 37507 |||| ||| || || ||||| ||||| || || || Sbjct 144142653 TTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAA 144142594 Query 37508 ACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGT 37566 ||||| || || | ||| | |||| ||||| || | || ||| | | |||| Sbjct 144142593 TCCATAGAAGCAGAAGGTTTCTG-TAATCTGAACTTCTTGAACAAATTGTTCCACCAAGT 144142535 Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626 |||||| | ||||||||||| |||||||||||||| |||| || ||||||||||| Sbjct 144142534 TTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTC 144142475 Query 37627 TTTCATCA 37634 |||| ||| Sbjct 144142474 TTTCCTCA 144142467 >seq1 Length=229942017 Score = 154 bits (170), Expect = 2e-32 Identities = 247/349 (71%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 37277 AAAAGATCCAGAA-AAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGA 37335 |||||| |||| ||||| |||||||| ||||| ||||| ||||||| || | ||| Sbjct 89927035 AAAAGA---AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCAT 89926979 Query 37336 AAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATT 37395 | || | | || ||| || | | ||||| |||||| || ||||| Sbjct 89926978 AGGTAGCCTCTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTTC---TTGACACA-- 89926924 Query 37396 CAATTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTAT 37455 | ||||||||| | || |||||||| | |||||| |||| |||| ||||| | Sbjct 89926923 -AGGTGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGT 89926865 Query 37456 CAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAA 37515 |||| || | ||||||||||||||| || | ||||| || || || || || |||| | Sbjct 89926864 CAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGA 89926805 Query 37516 AACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTA 37574 |||| ||||| | |||| ||||| || | ||| | || | ||||||||||| Sbjct 89926804 AACAGTGGGCTTCTG-TAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 89926746 Query 37575 ACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 |||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 89926745 ACTATCCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq5641 Length=113028656 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||||||||| || | || ||||| | |||| ||| || Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| || |||||||| || ||||| ||||| ||||| ||| Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951 Query 37320 ACAAGACGT 37328 |||| |||| Sbjct 102562952 ACAACACGT 102562960 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 102560552 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 102560610 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 102560611 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 102560644 >seq25851 Length=153482349 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 108797160 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 108797219 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || ||||||| ||||| || || ||||| | Sbjct 108797220 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 108797279 Query 37318 CTAC 37321 | || Sbjct 108797280 CCAC 108797283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591861197321400