Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq46691 129 5e-25
seq10472 118 9e-22
seq47930 82.4 6e-11
seq17816 82.4 6e-11
>seq46691
Length=94050890
Score = 129 bits (142), Expect = 5e-25
Identities = 127/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||
Sbjct 32059108 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 32059167
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| ||||| |||||||| ||||| || || ||||| | || |
Sbjct 32059168 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 32059227
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
|| || ||||| || | || ||||| ||||| || ||||| ||
Sbjct 32059228 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 32059271
Score = 118 bits (130), Expect = 9e-22
Identities = 127/168 (76%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || ||||||||||||||||| || || || || |||| |||
Sbjct 32063288 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 32063347
Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269
|| ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| ||
Sbjct 32063348 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 32063407
Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||| || || ||||| || |||||||| | |||||||| ||
Sbjct 32063408 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 32063455
>seq10472
Length=202140232
Score = 118 bits (130), Expect = 9e-22
Identities = 185/260 (71%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || |||||||| |||| || || || || |
Sbjct 39119779 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 39119720
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| ||||| |||||| || || ||||||||||| ||||| | |||||| ||||||| ||
Sbjct 39119719 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCGACCCATAATCACCAGATT 39119660
Query 112200 CTGCTT-GCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 112257
||| || ||||| |||||||| || | |||| | ||| | || | | || || ||
Sbjct 39119659 CTGTTTACCCTCT-ACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 39119602
Query 112258 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 112317
| || || |||| ||||| || ||||| || ||||||||||||| | | ||
Sbjct 39119601 CTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 39119548
Query 112318 ACGGCCACGATACCGTTCAG 112337
|| || ||||| | ||| ||
Sbjct 39119547 ACAGCGACGATGCAGTTTAG 39119528
>seq47930
Length=60714840
Score = 82.4 bits (90), Expect = 6e-11
Identities = 132/186 (71%), Gaps = 9/186 (5%)
Strand=Plus/Plus
Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219
|| ||||| || ||||||||||||||||| || || || || |||| ||| || ||||||
Sbjct 36493633 TATTCTGC-CCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCC 36493691
Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG--GCGTCCCAGATCT 30277
| ||| ||| ||| |||||||||||| || || || | || || || |
Sbjct 36493692 CAGTG-GAGAATCCCAAGTTGTCCAAAAAG-----GGCTCCACTGCCTCATCTCACATTT 36493745
Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30337
| || ||||| || || ||||| | | |||||| || ||| ||| |||||| ||
Sbjct 36493746 TCACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACGACAGCAACT 36493805
Query 30338 CCTCCA 30343
||||||
Sbjct 36493806 CCTCCA 36493811
>seq17816
Length=183952662
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || |||||||| |||| || || || || | | ||||| |||||| || ||
Sbjct 80839825 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 80839884
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| ||||||| ||||||| ||||| || |||
Sbjct 80839885 ATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 80839932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408311154038555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |