Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq47930 93.3 1e-14 >seq47930 Length=60714840 Score = 93.3 bits (102), Expect = 1e-14 Identities = 187/273 (68%), Gaps = 11/273 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| |||||||| ||| ||||||| ||||| || || || || || | Sbjct 53956676 TTCCTTCTGGGTGTTATGG-AGAGTAGCTCCAAGGTCTGGCTTGGCTGCAAAACACTTTG 53956734 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 ||||||| | |||||||| | ||| ||| | ||| || || ||||||||||| | | Sbjct 53956735 TTGATGTAGTAGCTGGTGTCACAGATGAAGATTATAGAGGAAATGTTGGTGTTGTACTCT 53956794 Query 1078 TTAATTTTAGC-GATAAGCGTTT----TCATATTTCAAGAGGTGATAGGATTGCTCAGTT 1132 |||||||| || | || |||| ||| | || ||||||| | || || ||| | Sbjct 53956795 TTAATTTTGGCAAAGAAAAGTTTGAAGTCAAA----AAAAGGTGATCGAATCGCACAGCT 53956850 Query 1133 AATTTGTGAAAAGGCTGTTTT-TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGG 1191 ||||||||| | | |||| |||| | || | || | | || || || | Sbjct 53956851 CATTTGTGAACGGATTTTTTTATCCAGAAAGAGAAGTTGTTCAAGCTTTGGATGACACCA 53956910 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAA 1224 |||||||||| | ||| ||||| ||||| |||| Sbjct 53956911 AAAGGGGTTCAGGAGGTTTTGGTTCTACTGGAA 53956943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138580261454460