Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq42212 89.7 4e-13
seq37270 87.8 1e-12
seq45237 82.4 6e-11
>seq1
Length=229942017
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||| || || ||| |||||| || || ||||| ||||| ||| | |
Sbjct 221679902 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGG 221679961
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||| || || ||||||||||| ||||| || || | || | ||||||
Sbjct 221679962 CCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCC 221680021
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||| || ||| ||| | | | || | ||| ||||| | ||
Sbjct 221680022 TTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 221680081
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| ||||| | || || ||||| ||||||||
Sbjct 221680082 ATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 221680119
>seq42212
Length=99152023
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || | |||||| | ||| || || ||| |||||||||||||| |||||
Sbjct 87790063 CCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 87790122
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | | || | || || | |||||| || ||||| ||||||| ||| ||||| | |||
Sbjct 87790123 AAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 87790182
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || ||||| || ||||| |||||| | | | || || | || |||
Sbjct 87790183 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 87790242
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | || || || || ||||| | ||||| | |||||||||||
Sbjct 87790243 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 87790289
>seq37270
Length=136387465
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||| || || || |||||| || || |||||||||||
Sbjct 127298267 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAC 127298326
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || |||| |||||| |||||||| |||| | ||| || || | |||
Sbjct 127298327 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 127298386
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| |||||||| |||||| || ||| | | | || | |||||||
Sbjct 127298387 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 127298446
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | || || || || || |||| || || || || |||||||||
Sbjct 127298447 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298494
Score = 86.0 bits (94), Expect = 5e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||| || || || |||||| || || |||||||||||
Sbjct 127298039 CCACCTCTGAGACGGAGCACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCAGAC 127298098
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || |||| ||| || |||||||| |||| | ||| || || | |||
Sbjct 127298099 AGGGTGCGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 127298158
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717
| |||||||||||| |||||| || || | | || | | | | || | ||| |
Sbjct 127298159 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC-GTTCTCA-ATAGTGTCACTAGGCTCGA 127298216
Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| | || || || || || |||| || || || || |||||||||
Sbjct 127298217 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298266
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||| || || ||| |||||| || || |||||||||||
Sbjct 127298495 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 127298554
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | ||| | || |||| |||||| |||||||| |||| | ||| || || | ||
Sbjct 127298555 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 127298614
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||| ||||| || |||||| || ||| | | | || | |||||||
Sbjct 127298615 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 127298674
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769
|| | || || || || || |||| ||| || || || |||||||| ||
Sbjct 127298675 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCATTGT 127298724
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || || || || | ||||| || || || |||||| || || ||||| |||||
Sbjct 127297811 CCACCTCTGAGACGAAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAG 127297870
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| | || | || |||| |||||| || ||||| |||| | || ||||| | |||
Sbjct 127297871 AGGGTGCGTCCATCTTCCAGCTGCTTTCCCGCAAAGATCAACCTTTGCTGATCAGGAGGA 127297930
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| |||||||||||| |||||| ||| ||| | | | || | ||| |||
Sbjct 127297931 ATGCCCTCCTTGTCCTGGATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACC 127297990
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| | ||||| || || || |||| || || || || |||||||||
Sbjct 127297991 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298038
>seq45237
Length=73212453
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/214 (69%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|||||| ||||| || || |||||||||||||||||| |||| | | | | | ||
Sbjct 10340762 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATC 10340703
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||| ||| || ||||| | |||| || | ||| ||
Sbjct 10340702 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTTCTTATC 10340643
Query 48674 GCTAATCTTTTGTTTTACAGAACCCA-CAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732
||||| |||||| | | || | ||||| | || ||||| | || || |
Sbjct 10340642 CTGGATCTTGGCCTTTACATTTTCTATCATA-TCTGAAGGTTCAACCTCGAGGGTGATGG 10340584
Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
| || ||||| | ||||| || |||||||||||
Sbjct 10340583 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10340550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380651912870805
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |