Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 seq42212 89.7 4e-13 seq37270 87.8 1e-12 seq45237 82.4 6e-11 >seq1 Length=229942017 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||| || || ||| |||||| || || ||||| ||||| ||| | | Sbjct 221679902 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGG 221679961 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || ||||||||||| ||||| || || | || | |||||| Sbjct 221679962 CCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCC 221680021 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || | ||| ||||| | || Sbjct 221680022 TTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTG 221680081 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| | || || ||||| |||||||| Sbjct 221680082 ATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 221680119 >seq42212 Length=99152023 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || | |||||| | ||| || || ||| |||||||||||||| ||||| Sbjct 87790063 CCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 87790122 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || | || || | |||||| || ||||| ||||||| ||| ||||| | ||| Sbjct 87790123 AAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 87790182 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||||| |||||| | | | || || | || ||| Sbjct 87790183 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 87790242 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||| | ||||| | ||||||||||| Sbjct 87790243 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCAT 87790289 >seq37270 Length=136387465 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || |||||| || || ||||||||||| Sbjct 127298267 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAATCAGAC 127298326 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 127298327 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 127298386 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| |||||| || ||| | | | || | ||||||| Sbjct 127298387 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 127298446 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || |||| || || || || ||||||||| Sbjct 127298447 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298494 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || |||||| || || ||||||||||| Sbjct 127298039 CCACCTCTGAGACGGAGCACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAATCAGAC 127298098 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| ||| || |||||||| |||| | ||| || || | ||| Sbjct 127298099 AGGGTGCGACCATCTTCCAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGA 127298158 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717 | |||||||||||| |||||| || || | | || | | | | || | ||| | Sbjct 127298159 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGAC-GTTCTCA-ATAGTGTCACTAGGCTCGA 127298216 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | || || || || || |||| || || || || ||||||||| Sbjct 127298217 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298266 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || ||| |||||| || || ||||||||||| Sbjct 127298495 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAC 127298554 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || |||| |||||| |||||||| |||| | ||| || || | || Sbjct 127298555 AGGGTGCGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 127298614 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| ||||| || |||||| || ||| | | | || | ||||||| Sbjct 127298615 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 127298674 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || | || || || || || |||| ||| || || || |||||||| || Sbjct 127298675 TCGAGGGTGATGGTCTTACCAGTCAGAGTCTTCACGAAGATCTGCATTGT 127298724 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || | ||||| || || || |||||| || || ||||| ||||| Sbjct 127297811 CCACCTCTGAGACGAAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAG 127297870 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || |||| |||||| || ||||| |||| | || ||||| | ||| Sbjct 127297871 AGGGTGCGTCCATCTTCCAGCTGCTTTCCCGCAAAGATCAACCTTTGCTGATCAGGAGGA 127297930 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| ||| ||| | | | || | ||| ||| Sbjct 127297931 ATGCCCTCCTTGTCCTGGATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACC 127297990 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||| || || || |||| || || || || ||||||||| Sbjct 127297991 TCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 127298038 >seq45237 Length=73212453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| ||||| || || |||||||||||||||||| |||| | | | | | || Sbjct 10340762 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATC 10340703 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||| ||| || ||||| | |||| || | ||| || Sbjct 10340702 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTTCTTATC 10340643 Query 48674 GCTAATCTTTTGTTTTACAGAACCCA-CAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 ||||| |||||| | | || | ||||| | || ||||| | || || | Sbjct 10340642 CTGGATCTTGGCCTTTACATTTTCTATCATA-TCTGAAGGTTCAACCTCGAGGGTGATGG 10340584 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| | ||||| || ||||||||||| Sbjct 10340583 TCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 10340550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380651912870805