Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq47930 134 3e-26
seq51122 129 1e-24
seq36523 95.1 2e-14
seq1 93.3 8e-14
>seq47930
Length=60714840
Score = 134 bits (148), Expect = 3e-26
Identities = 160/215 (74%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||| | ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 18691450 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAG- 18691508
Query 241475 CCTGCGTTGTCAGACTT--GAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532
|| ||| || | ||| ||| |||||||||||| ||||| |||| |||||| ||||
Sbjct 18691509 -CTCCGTGTTCTGGCTTTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCA 18691567
Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592
| |||||| |||||| |||| ||| || | |||||| || || | ||| || |||||||
Sbjct 18691568 GCTTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCT 18691627
Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||||| ||||| |||||||||| || |||
Sbjct 18691628 TGATGCGCTCCTGCGTGACCATGTCGATGGGCGAC 18691662
>seq51122
Length=156195299
Score = 129 bits (142), Expect = 1e-24
Identities = 461/714 (65%), Gaps = 25/714 (4%)
Strand=Plus/Plus
Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032
|||| ||||||| ||| || | | ||||| || ||||| ||| ||||| ||||
Sbjct 44959319 ACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 44959378
Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092
||||| || |||| |||||||| || || | | || | | || | ||
Sbjct 44959379 CGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTCTCTCCT 44959438
Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152
| || | ||||| |||||| ||| | | || ||| ||||| || | ||| || |
Sbjct 44959439 CCGATGTTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 44959495
Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212
| || || | ||| || || | ||||| || ||| |||||||| || | | |
Sbjct 44959496 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCT 44959555
Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272
|||||||||| || | || ||||| || || ||||||| ||| || ||||| ||||| |
Sbjct 44959556 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTACTGCAGCGAAGG 44959615
Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCT 48331
| | | || || | | ||| | ||||| |||||| | ||| ||||| |||
Sbjct 44959616 CTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAG-GCCCAATCT 44959674
Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCT 48391
||||||||||||| || |||||||| || ||||| ||||| | | || | |
Sbjct 44959675 GCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA------TAAATTCCCTT 44959728
Query 48392 GCGTCCGCAACATAGGT---AGTG------AGCAGCTTTGCGTACATCTCAGAGTGCACA 48442
| | | | | | | | |||| || || | ||||| ||||| || |
Sbjct 44959729 TCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATG 44959785
Query 48443 TTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACT-TCTGT 48501
|| || || || || ||||| || ||||| | ||| || | ||| ||| | ||
Sbjct 44959786 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGA 44959845
Query 48502 GGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAG 48561
| |||| ||||| || ||| ||||| ||||| ||||| || |||||||| | ||
Sbjct 44959846 CTA-AATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAG 44959904
Query 48562 GACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTT 48621
||||| | |||| | ||| | | | | || | | |||| | | | ||| ||
Sbjct 44959905 AACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCTT 44959964
Query 48622 GCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675
| ||||||||| |||||| ||||||||||| || || || || |||||
Sbjct 44959965 GGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44960018
>seq36523
Length=132107971
Score = 95.1 bits (104), Expect = 2e-14
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| || || |||||||||||||||||| |||||| ||||||||||| |||
Sbjct 66621922 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 66621981
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| ||||||||||| || |||| || || ||| |||
Sbjct 66621982 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTCTG 66622040
Query 213647 GGAC 213650
|||
Sbjct 66622041 AGAC 66622044
>seq1
Length=229942017
Score = 93.3 bits (102), Expect = 8e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||| ||||| | ||||| || | ||||| |||| |||
Sbjct 170792027 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 170791968
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 170791967 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 170791908
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 170791907 ATGGGGGAC 170791899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 930816276614400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |