Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq47930 134 3e-26 seq51122 129 1e-24 seq36523 95.1 2e-14 seq1 93.3 8e-14 >seq47930 Length=60714840 Score = 134 bits (148), Expect = 3e-26 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||| | ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 18691450 AGGACTTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAG- 18691508 Query 241475 CCTGCGTTGTCAGACTT--GAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | ||| ||| |||||||||||| ||||| |||| |||||| |||| Sbjct 18691509 -CTCCGTGTTCTGGCTTTTGAGGGTCTTCACTTTCTCTTCCAGGCGCGAGATGCGCTCCA 18691567 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | |||||| |||||| |||| ||| || | |||||| || || | ||| || ||||||| Sbjct 18691568 GCTTGCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCCGCTTGCGCTCCGCCT 18691627 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||| ||||| |||||||||| || ||| Sbjct 18691628 TGATGCGCTCCTGCGTGACCATGTCGATGGGCGAC 18691662 >seq51122 Length=156195299 Score = 129 bits (142), Expect = 1e-24 Identities = 461/714 (65%), Gaps = 25/714 (4%) Strand=Plus/Plus Query 47973 ACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACGGGCAAAGCCT 48032 |||| ||||||| ||| || | | ||||| || ||||| ||| ||||| |||| Sbjct 44959319 ACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 44959378 Query 48033 TTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACT 48092 ||||| || |||| |||||||| || || | | || | | || | || Sbjct 44959379 CGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTCTCTCACTCTCTCCT 44959438 Query 48093 CTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGC 48152 | || | ||||| |||||| ||| | | || ||| ||||| || | ||| || | Sbjct 44959439 CCGATGTTTTGTGTACCAGGTGTTTGA---ACATCAAGCAAGCAAAATCACAGTGTAAAC 44959495 Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 | || || | ||| || || | ||||| || ||| |||||||| || | | | Sbjct 44959496 CCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGGTCCTCGTTTCT 44959555 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 |||||||||| || | || ||||| || || ||||||| ||| || ||||| ||||| | Sbjct 44959556 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTACTGCAGCGAAGG 44959615 Query 48273 CGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAGCGCCCAGTCT 48331 | | | || || | | ||| | ||||| |||||| | ||| ||||| ||| Sbjct 44959616 CTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAG-GCCCAATCT 44959674 Query 48332 GCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTCACCT 48391 ||||||||||||| || |||||||| || ||||| ||||| | | || | | Sbjct 44959675 GCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA------TAAATTCCCTT 44959728 Query 48392 GCGTCCGCAACATAGGT---AGTG------AGCAGCTTTGCGTACATCTCAGAGTGCACA 48442 | | | | | | | | |||| || || | ||||| ||||| || | Sbjct 44959729 TCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACT---ATACATTTCAGAATGTATG 44959785 Query 48443 TTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACT-TCTGT 48501 || || || || || ||||| || ||||| | ||| || | ||| ||| | || Sbjct 44959786 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTTGA 44959845 Query 48502 GGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAG 48561 | |||| ||||| || ||| ||||| ||||| ||||| || |||||||| | || Sbjct 44959846 CTA-AATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCAG 44959904 Query 48562 GACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTT 48621 ||||| | |||| | ||| | | | | || | | |||| | | | ||| || Sbjct 44959905 AACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCTT 44959964 Query 48622 GCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 | ||||||||| |||||| ||||||||||| || || || || ||||| Sbjct 44959965 GGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 44960018 >seq36523 Length=132107971 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||||||||||||| |||||| ||||||||||| ||| Sbjct 66621922 GTGTACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 66621981 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| ||||||||||| || |||| || || ||| ||| Sbjct 66621982 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCTGTCTG 66622040 Query 213647 GGAC 213650 ||| Sbjct 66622041 AGAC 66622044 >seq1 Length=229942017 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 170792027 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 170791968 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| |||||||||| Sbjct 170791967 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 170791908 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 170791907 ATGGGGGAC 170791899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930816276614400