Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq51122 134 3e-26 seq5641 84.2 4e-11 >seq51122 Length=156195299 Score = 134 bits (148), Expect = 3e-26 Identities = 383/574 (67%), Gaps = 26/574 (5%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| ||||||| |||||||| | || ||||||| | |||||| | || Sbjct 44960030 GATATCTGGCAGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACGGAAGAGGTGGAC 44959971 Query 25534 CTGGCCAAGGACATGGACGGC--TGGTACGCTCT--ATCCAAAGACGAGCAGCATTTTCT 25589 ||| |||||||||| |||| ||| | | || | || || ||| || ||||| | Sbjct 44959970 CTGTCCAAGGACATT--CGGCACTGGGAATCCCTGAAGCCCGAGGAGAG-AG-ATTTTAT 44959915 Query 25590 CAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | || ||| ||||||||||| |||||| ||||| || || ||| || || Sbjct 44959914 ATCCCATGTTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGA 44959855 Query 25650 GAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATG 25707 | |||| | ||| ||| ||| || ||| |||||||| || ||||| || Sbjct 44959854 GCGATTTAGTCAAATAGTTCAGATTACA--GAAGCCCGCTGTTTCTATGGCTTCCAAATT 44959797 Query 25708 GCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACA 25764 ||||| ||||| | || ||||| ||||| | || || || || ||||| | | Sbjct 44959796 GCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGACACTTACATCAAA 44959740 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || | || || || | || |||||| || || || | |||||| | Sbjct 44959739 GATCCCAAAGAAAGGGAATTTATCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAG 44959680 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCA---ACAGCCAGAGCGCTACGTTTGGCGAGCGG 25881 ||||| |||||| || ||||| ||| |||| ||||| | ||| || || Sbjct 44959679 AAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAA--AGAG-GCTACCTATGGTGAACGT 44959623 Query 25882 CTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTC 25941 | |||||||| ||||| || || ||| |||| || |||||| ||||| | || ||| Sbjct 44959622 GTTGTAGCCTTCGCTGCAGTAGAAGGCGTCTTCTTTTCCGGTTCTTTTGCATCGATATTC 44959563 Query 25942 TGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAG 26000 ||||||||| | | | ||||| ||||| || || |||||||| || || || ||||| Sbjct 44959562 TGGCTCAAG-AAACGAGGACCGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAG 44959504 Query 26001 GGACGAGGGTCTCCACAGAGATTTTGCCTGCCTG 26034 || |||||| | ||| | |||||||| ||| || Sbjct 44959503 AGATGAGGGTTTACACTGTGATTTTGCTTGCTTG 44959470 >seq5641 Length=113028656 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| || |||||| ||||| | || |||||| Sbjct 102562953 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 102562894 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 |||||| | | | |||| ||||| || || ||||| || || || || ||||| || Sbjct 102562893 CTCAAG-AAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 102562835 Query 26004 CGAGG 26008 |||| Sbjct 102562834 TGAGG 102562830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928130344190400