Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_019711.1
Length=47288
Score E
Sequences producing significant alignments: (Bits) Value
seq45414 232 2e-56
seq40942 129 2e-25
seq14467 105 2e-18
seq39285 96.9 1e-15
>seq45414
Length=3364477
Score = 232 bits (256), Expect = 2e-56
Identities = 292/397 (74%), Gaps = 18/397 (5%)
Strand=Plus/Minus
Query 6755 ACGATGGTGCTGGGGAACACTCAGGCACGCGGTCTGCGCACCTATG-GCTGCATTCAGGA 6813
|| |||||||||||||| || ||||| || || ||||| ||||||| ||||||||| ||
Sbjct 2349225 ACAATGGTGCTGGGGAATACCCAGGCTCGTGGCCTGCGTACCTATGAGCTGCATTCTTGA 2349166
Query 6814 TGCGGACGCACAGCGCGAAGGCATTAACGCCTCTGCCCGTTACCCGAAAAACTGGGTGAC 6873
||| || || ||||||||||| || || ||||| | || ||||||||||||||||||
Sbjct 2349165 TGCTGATGCCCAGCGCGAAGGTATCAATGCCTCGACACGCTACCCGAAAAACTGGGTGCA 2349106
Query 6874 CACCGGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGC 6933
| || ||||||||||| || |||||||||||||||||||| ||||||||||||||| |
Sbjct 2349105 GTCGGGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCC 2349046
Query 6934 TGACCCTGATGAGTTCGTGTCCGTACAACTGGCGTAA--TC-----ATGGCCCTTCGGGG 6986
|||||||| | ||||| ||||| ||||||| ||| || ||||||| |||
Sbjct 2349045 AGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGG 2348986
Query 6987 CCATTGTTTCTCTGTGGAGGAGT--CCATGAC---GAAAGATGAACTGATTGCCCGTCTC 7041
||| || | ||||| | | ||||||| |||||| | ||||| || || ||
Sbjct 2348985 CCA-----CCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAAGCTGATCGCTCGCCTG 2348931
Query 7042 CGCTCGCTGGGTGAACAACTGAACCGTGATGTCAGCCTGACGGGGACGAAAGAAGAACTG 7101
|| || || || ||||| || |||||| | || |||| | |||||
Sbjct 2348930 AATGACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTT 2348871
Query 7102 GCGCTCCGTGTGGCAGAGCTGAAAGAGGAGCTTGATG 7138
|| | ||| | || |||||| |||||||||| ||||
Sbjct 2348870 ACGATGCGTATTGCTGAGCTGGAAGAGGAGCTGGATG 2348834
>seq40942
Length=108868599
Score = 129 bits (142), Expect = 2e-25
Identities = 194/273 (71%), Gaps = 17/273 (6%)
Strand=Plus/Plus
Query 6878 GGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGAC 6937
|| ||||||||||| || |||||||||||||||||||| ||||||||||||||| | |||
Sbjct 85057840 GGGGATCCGGCGCGCGAATTCACCATGATTCAGTCAGCTCCGCTGATGCTGCTGCCAGAC 85057899
Query 6938 CCTGATGAGTTCGTGTCCGTACAACTGGCGTAA--TC-----ATGGCCCTTCGGGGCCAT 6990
||||| | ||||| ||||| ||||||| ||| || ||||||| ||||||
Sbjct 85057900 CCTGACGCATTCGTCTCCGTCAAACTGGCATAACTTCCCCCAGTGGCCCTGTCGGGCCA- 85057958
Query 6991 TGTTTCTCTGTGGAGGAGT--CCATGAC---GAAAGATGAACTGATTGCCCGTCTCCGCT 7045
|| | ||||| | | ||||||| |||||| ||||||| || || ||
Sbjct 85057959 ----CCTTTCTGGAGTATTTCCCATGACAGAGAAAGAAAAACTGATCGCTCGCCTGAATG 85058014
Query 7046 CGCTGGGTGAACAACTGAACCGTGATGTCAGCCTGACGGGGACGAAAGAAGAACTGGCGC 7105
|| || || || ||||| || |||||| | || |||| | ||||| ||
Sbjct 85058015 ACCTTGGCACTCAGCTTAACCGCGAGGTCAGCACCAGCGGCACGATTCAGGAACTTACGA 85058074
Query 7106 TCCGTGTGGCAGAGCTGAAAGAGGAGCTTGATG 7138
| ||| | || |||||| |||||||||| ||||
Sbjct 85058075 TGCGTATTGCTGAGCTGGAAGAGGAGCTGGATG 85058107
>seq14467
Length=6693
Score = 105 bits (116), Expect = 2e-18
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 6860 AAAAACTGGGTGACCACCGGCGATCCGGCGCGTGAGTTCACCATGATTCAGTCAGCACCG 6919
|||||||||||| | || ||||||||||| || ||| ||||||||||||||| |||
Sbjct 1922 AAAAACTGGGTGCATTCGGGGGATCCGGCGCGCGAATTCCTCATGATTCAGTCAGCTCCG 1981
Query 6920 CTGATGCTGCTGGCTGACCCTGATGAGTTCGTGTCCGTACAACTGGCGTAA 6970
|||||| ||||| | |||||||| | ||||| ||||| ||||||| |||
Sbjct 1982 CTGATGATGCTGCCAGACCCTGACGCATTCGTCTCCGTCAAACTGGCATAA 2032
>seq39285
Length=117095149
Score = 96.9 bits (106), Expect = 1e-15
Identities = 103/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 6836 ATTAACGCCTCTGCCCGTTACCCGAAAAACTGGGTGACCACCGGCGATCCGGCGCGTGAG 6895
|| || || || ||| |||||||||||||||||| | || ||||||||||| ||
Sbjct 103031235 ATCAATGCGTCAACCCTCTACCCGAAAAACTGGGTGCAGTCGGGGGATCCGGCGCGCGAA 103031176
Query 6896 TTCACCATGATTCAGTCAGCACCGCTGATGCTGCTGGCTGACCCTGATGAGTTCGTGTCC 6955
||| ||||||||| ||| | ||||||||||||||| | |||||||| | |||| |||
Sbjct 103031175 TTCTTCATGATTCATTCATCTCCGCTGATGCTGCTGCCAGACCCTGACGCATTCGACTCC 103031116
Query 6956 GTACAACTGGCGTAA 6970
| |||||| |||
Sbjct 103031115 -TGTCACTGGCCTAA 103031102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151089513907500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |