Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq28484 300 2e-76 seq10472 176 5e-39 seq18647 116 4e-21 >seq28484 Length=135191526 Score = 300 bits (332), Expect = 2e-76 Identities = 668/993 (67%), Gaps = 17/993 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||| Sbjct 71460290 TGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTA 71460231 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || | || ||||||| || ||| || | ||||| | | Sbjct 71460230 TTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 71460174 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || || | || || || | ||| || ||||| |||| || || | || ||| Sbjct 71460173 CACACTGAGCGCACATGGACTCCATCGCAGGGTGGGTAGGGAGCACCCTTGGAAACATCA 71460114 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || || || Sbjct 71460113 CCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCATAC 71460054 Query 160287 TTGTACAT--CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 || | | ||| | || |||||| | | || || | || | ||||||||| | Sbjct 71460053 TTATGGCTGGCAGAGAGTGAGC-CCGGGA-CTTCAGGAATCCTTTGGATGGTGGCCCAGA 71459996 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGT 160404 | | || || ||||| || ||||| | | ||| ||||| |||| | |||| | Sbjct 71459995 GATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTCAT 71459936 Query 160405 CCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATA 160464 | | || || | || || || | || || ||||| || ||||| || || | Sbjct 71459935 TCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAAAA 71459876 Query 160465 TCGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 ||| | | || ||| |||| |||| | || ||||| | | | ||| | Sbjct 71459875 GAGGTGTTTCGAGTGGAGGAAGCGT---TTTGACAGTCCCTGTGTTTGTTAGCTTTCCAT 71459819 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | || | | | | |||||||||||||| | || || | |||||| | ||||| | Sbjct 71459818 TAACGACCTCATACCGCTTCTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTT 71459759 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || | | | || |||| | |||| || |||||||| || || | Sbjct 71459758 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 71459699 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | ||||||| ||||||||| || || |||| | | | Sbjct 71459698 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 71459639 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 ||||| ||||||| || | || ||||| || |||||||| || || || || || ||| Sbjct 71459638 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 71459579 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG-- 160819 | | | |||||||||||||| ||| ||||| || |||| |||| ||| | ||| Sbjct 71459578 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTG-CAGCT 71459520 Query 160820 AAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 ||| | | | || | ||| |||||| || | |||||| | ||||||||| || Sbjct 71459519 AAATAGGA-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 71459461 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||||||||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || || Sbjct 71459460 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 71459401 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 ||| |||||||| | ||| || ||| |||| | | || || || ||||||| Sbjct 71459400 TATTGGAAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGAT 71459341 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| || ||| || | |||||||| ||||| Sbjct 71459340 GAAAGAAGAACAGTCACTGGTCATGTTTATATA 71459308 >seq10472 Length=202140232 Score = 176 bits (194), Expect = 5e-39 Identities = 234/324 (72%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 168151 ATAGA--GTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCA 168208 ||||| || | ||| | | |||| || ||||| || | || || || |||||||| || Sbjct 20503406 ATAGACGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGACA 20503465 Query 168209 CATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAG 168268 |||| | || ||||| ||||||| |||| ||||||| || || | ||||||||| |||| Sbjct 20503466 CATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAG 20503525 Query 168269 GCCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTT 168328 |||| ||| || ||||| | |||||||| | ||| || | || || || ||||| Sbjct 20503526 TCCCAGCTGGGTAATGTTTATCTTGTCTTTATAGGCAGGCTGGATCACCACCCCATGGTT 20503585 Query 168329 CTCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTAT 168388 ||||||||||||| ||||||| || ||||| || || | |||||||| ||||| || Sbjct 20503586 CTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTTACAAT 20503645 Query 168389 CAGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTC 168448 || | || | | | ||||| || ||| | | ||||| || |||| |||| | || Sbjct 20503646 GAGGGCTTCCTGTGCATTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCTC 20503705 Query 168449 TCGCTCATCTTGAGTTACGACCTG 168472 || ||||| || || || || || Sbjct 20503706 TCTTTCATCCTGGGTCACCACTTG 20503729 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 |||||| | ||| || ||||| |||| || || |||| ||| |||||||| || Sbjct 20500874 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 20500930 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| | || | ||||| || ||| || || ||||| Sbjct 20500931 CCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCATTT 20500990 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| | Sbjct 20500991 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGACC 20501050 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || ||||||| Sbjct 20501051 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 20501090 >seq18647 Length=51634 Score = 116 bits (128), Expect = 4e-21 Identities = 582/913 (64%), Gaps = 23/913 (3%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||||| || | || |||| ||| ||| || | ||||| ||| ||| | ||| Sbjct 39885 TGTCTCAGATGATCATTCAAACATCGGATGGCAAAGAGGTCAATGTCGATGTCAAGCTTA 39944 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || |||| ||||| || | || ||||| | || ||| || | | ||| | | Sbjct 39945 TTGGCAAACAAGTGGTGC---TTGCGCAGCATCCATTTCAAGTCACCAGCTCTGAAAATG 40001 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || | | | ||| | || | || || ||||| |||| || || | || ||| Sbjct 40002 CACACCAAGTGCACGTGGTCCCCATGGCGGGGTGGGTAGGGAGCACCCTTGGAAACATCA 40061 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||| ||||||||| ||||| ||||| | || || |||| | ||| || Sbjct 40062 CCCTCCAAGTGCTGCCACTTGACAAATCTGGCAACTGCATGTGTGTCAGGCAAGTCATAC 40121 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | | ||| || | || |||| ||| | |||||| || || Sbjct 40122 TTATGGCTTGTGGAGAGTGAGCTGGGGACTTCAGGAATACTCTGGATGGTGGCTCAGAGA 40181 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCT-GTC 160405 || || ||||||||||| ||||| | | ||| ||||| |||| | |||| | || Sbjct 40182 TGCTCATCGGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGATTTTTTTAATC 40241 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | | || || | || || || | || ||||| || | | || || | | Sbjct 40242 CTGAAGTACATACCCTACATACTCCCTACTGACCACAAAATAGACACACCCTGAACAAAG 40301 Query 160466 CGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 || | || ||| ||| | ||| | | || ||||| | || | ||| Sbjct 40302 AAGTGTCTCAAGTGGAGGAGGCAT---TTTAACATTCCCTGTGTTTGTCAGCTTTCC--- 40355 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGAC-CATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 | | | | | |||| |||||||| | | ||| || | |||||| | ||| | | Sbjct 40356 AAAAACCTCATACTGCTTTTTCCACCTTTCTCCTCTATTG-GATGGCATCCTCTCCATTT 40414 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | || |||| | || | | | || | || | |||| || ||||||| | || | Sbjct 40415 CGAGGTTGTTTTCTCCCATTAACAACTTGATCTTCCTGACAATTGCTAGGTTGGCTTTAA 40474 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCA 160701 ||||| || |||| || | ||||||| ||| ||||| || |||| | | | Sbjct 40475 TAGGAAAATCCATACCACAAAGTTTTATCAAGTATTTCCAGCCTGCACTCATTGCTTAGA 40534 Query 160702 GGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCT 160761 ||| ||||||||| || | || |||| || ||||||| || || || || | ||| Sbjct 40535 GGT-CCTCATGCAGTTGAGGTCATCCTGAACCTGGCTCCATGATGCATAAACCATACTCT 40593 Query 160762 CTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGAT-TCC--CACCACCGCCA 160818 | | | |||||||||||||| ||| ||||| | | || ||| ||| | || | Sbjct 40594 CCAATCAGCTGGCCACAAAGACTTTACTAAAACAGAATGCAATGTCCATCACTGCAGCTA 40653 Query 160819 GAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGT 160878 |||| | ||| || | ||| ||| | ||| | | ||| | ||||||||| | Sbjct 40654 AAAAGGA-ATC--CTCTGATTTTTTGTCTATGTGAATGTGATAGAAATTCTGAGGCATAT 40710 Query 160879 AGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGG 160938 |||| ||||| || | ||| || | ||| || ||||| ||||| | ||| ||||| || | Sbjct 40711 AGAT-GCCCTCAGTATCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATG 40769 Query 160939 CTATCGGAAACTC 160951 || | ||||||| Sbjct 40770 CTGTTTGAAACTC 40782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576775210206600