Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq51122 134 2e-26 seq1 87.8 3e-12 >seq51122 Length=156195299 Score = 134 bits (148), Expect = 2e-26 Identities = 296/441 (67%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || ||||||||| ||||||||| ||||||||| || | ||| || |||||| Sbjct 44959471 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44959530 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||| |||| ||| || ||||| ||||||||||| ||| || |||||| Sbjct 44959531 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAG 44959590 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333 || | || || || ||| ||||| |||| | | |||| || | | | ||| Sbjct 44959591 AAGACGCCTTCTACTGCA-GCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 44959649 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | ||||| ||||| ||| | | | ||| || || | || || || Sbjct 44959650 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 44959709 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || | | || ||||||||| |||||| || |||||||| || | | | ||| Sbjct 44959710 ATTGAAGATAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44959769 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||||||||||||||| ||||||| || || || || | ||| || | | || || | Sbjct 44959770 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44959829 Query 18514 ATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572 | |||| || | | ||||| || |||||||| ||||| ||||| || ||| | Sbjct 44959830 AATCTGAA-CTATTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTG 44959888 Query 18573 ATGCGAAAAATGCCAAAACAT 18593 ||| || || ||| ||||| Sbjct 44959889 CTGCAAAGAAAACCAGAACAT 44959909 >seq1 Length=229942017 Score = 87.8 bits (96), Expect = 3e-12 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||||||||||||||| |||||||| || | | | |||||||||||||||| || Sbjct 89926891 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 89926832 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527 ||||||| || || || || ||| || | || || | | |||| || | || Sbjct 89926831 TTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGC 89926772 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 | ||||| || ||||| || ||||| ||||| || ||| | ||| || || |||| Sbjct 89926771 T---AAATCGCTCCACCAAGTTTTCATTTACTATCCCATCACTTGCTGCAAAGAAAGCCA 89926715 Query 18588 AAACA 18592 |||| Sbjct 89926714 GAACA 89926710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731309053206000