Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 134 2e-26
seq1 87.8 3e-12
>seq51122
Length=156195299
Score = 134 bits (148), Expect = 2e-26
Identities = 296/441 (67%), Gaps = 4/441 (1%)
Strand=Plus/Plus
Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214
|| || ||||||||| ||||||||| ||||||||| || | ||| || ||||||
Sbjct 44959471 AAGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTG 44959530
Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274
| || ||||| |||| ||| || ||||| ||||||||||| ||| || ||||||
Sbjct 44959531 AGGCCAGGCATCGGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAG 44959590
Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCT 18333
|| | || || || ||| ||||| |||| | | |||| || | | | |||
Sbjct 44959591 AAGACGCCTTCTACTGCA-GCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTC 44959649
Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393
| ||||| ||||| ||| | | | ||| || || | || || ||
Sbjct 44959650 CCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 44959709
Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453
||| || | | || ||||||||| |||||| || |||||||| || | | | |||
Sbjct 44959710 ATTGAAGATAAATTCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATA 44959769
Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513
|||||||||||||||| ||||||| || || || || | ||| || | | || || |
Sbjct 44959770 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGT 44959829
Query 18514 ATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAG 18572
| |||| || | | ||||| || |||||||| ||||| ||||| || ||| |
Sbjct 44959830 AATCTGAA-CTATTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTG 44959888
Query 18573 ATGCGAAAAATGCCAAAACAT 18593
||| || || ||| |||||
Sbjct 44959889 CTGCAAAGAAAACCAGAACAT 44959909
>seq1
Length=229942017
Score = 87.8 bits (96), Expect = 3e-12
Identities = 132/185 (71%), Gaps = 6/185 (3%)
Strand=Plus/Minus
Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470
||||||||||||||||||| |||||||| || | | | |||||||||||||||| ||
Sbjct 89926891 TTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGT 89926832
Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAA--TC-TCGC 18527
||||||| || || || || ||| || | || || | | |||| || | ||
Sbjct 89926831 TTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGC 89926772
Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587
| ||||| || ||||| || ||||| ||||| || ||| | ||| || || ||||
Sbjct 89926771 T---AAATCGCTCCACCAAGTTTTCATTTACTATCCCATCACTTGCTGCAAAGAAAGCCA 89926715
Query 18588 AAACA 18592
||||
Sbjct 89926714 GAACA 89926710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731309053206000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |