Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq42212 141 2e-28 seq25851 123 5e-23 seq1 120 6e-22 seq45237 118 2e-21 seq51122 111 3e-19 seq20726 109 1e-18 seq49093 105 1e-17 seq23159 102 2e-16 seq37270 100 6e-16 seq9309 91.5 3e-13 seq17816 86.0 1e-11 seq47930 84.2 4e-11 >seq42212 Length=99152023 Score = 141 bits (156), Expect = 2e-28 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| ||||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 87790062 ACCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 87790120 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| || | || || ||||||||||| | |||||| |||||||| | Sbjct 87790121 ACAAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 87790180 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 87790181 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 87790240 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| || || ||||||||||| Sbjct 87790241 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 87790292 >seq25851 Length=153482349 Score = 123 bits (136), Expect = 5e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 83238645 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 83238587 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| || || ||||||||||| | |||||| |||| ||| | Sbjct 83238586 ACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGATGAGGAG 83238527 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| ||| || | ||| | Sbjct 83238526 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAA 83238467 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | || || ||||| || || | | ||||| || || ||||||||||| Sbjct 83238466 CCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 83238415 >seq1 Length=229942017 Score = 120 bits (132), Expect = 6e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || ||||| || ||||| || || ||| |||| |||| | Sbjct 142062302 ATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCT 142062360 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || ||||||||||| | |||| | |||||||| | |||||||| ||||| || || | Sbjct 142062361 GCTTGCCAGCAAAGATCAGTCTCCGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCT 142062420 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| ||| | ||| || | ||| || || || || ||||| || || | Sbjct 142062421 TGGCCTTTACATTTTCTATCGTATCCGAGGGTTCGACCTCGAGGGTGATGGTCTTCCCCG 142062480 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||||| | || ||||||||||| Sbjct 142062481 TAAGGGTTTTCACGAAAATCTGCATTTT 142062508 Score = 120 bits (132), Expect = 6e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || ||||| || ||||| || || ||| |||| |||| | Sbjct 142066373 ATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGCT 142066431 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || ||||||||||| | |||||| |||||||| | |||||||| ||||| || || | Sbjct 142066432 GCTTGCCAGCAAAGATCAGTCTCTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCT 142066491 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| ||| | ||| || | || || || || || ||||| || || | Sbjct 142066492 TGGCCTTTACATTTTCTATCGTATCCGAGGGTTTGACCTCGAGGGTGATGGTCTTCCCCG 142066551 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||||| | || ||||||||||| Sbjct 142066552 TAAGGGTTTTCACGAAAATCTGCATTTT 142066579 >seq45237 Length=73212453 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || ||||| | ||||| |||||| ||||| || |||| || || | | |||| Sbjct 10340761 AACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGCCAGACAAAGTACATCCATCT 10340702 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 |||| ||| || ||||||||||| ||| || |||||||| || ||||||| ||||| Sbjct 10340701 TCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTTCTTATCC 10340642 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || |||||||| ||| |||||| | ||| || || || || ||||| Sbjct 10340641 TGGATCTTGGCCTTTACATTTTCTATCATATCTGAAGGTTCAACCTCGAGGGTGATGGTC 10340582 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | ||||| | || ||||||||||| Sbjct 10340581 TTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10340547 >seq51122 Length=156195299 Score = 111 bits (122), Expect = 3e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || || | ||||| || || ||| |||| |||| || Sbjct 3370917 ATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTT 3370859 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || ||||||||||| | ||| || |||||||| | |||||||| ||||| || || | Sbjct 3370858 GCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTTATCCTGGATCT 3370799 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| ||| | |||||| | ||| | || || || ||||| || || Sbjct 3370798 TGGCCTTTACATTTTCTATCGCATCTGAGGGTTCAGCCTCAAGGGTGATGGTCTTCCCCC 3370739 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 ||| ||||| | || ||||||| ||| Sbjct 3370738 TTAGGGTTTTCACGAAAATCTGCAGTTT 3370711 >seq20726 Length=174210431 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| || || ||||| | ||||| ||| ||| || ||| | || |||| Sbjct 115806507 ACCACCACGAAGTTTCAACACAAAATGAAGAGTAGACTCCTTTTGA-ATACTGTAGTCAG 115806449 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 115806448 ACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 115806389 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| ||| | | ||| Sbjct 115806388 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGGTTTCAG 115806329 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | || || ||||| || | || || |||| | ||| ||||||||||| Sbjct 115806328 CCTTGAGGGTGATGGTCTTCTCTGTAAAACTTTTCACAAAAATCTGCATTTT 115806277 >seq49093 Length=62736349 Score = 105 bits (116), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 192311 CACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGAT 192369 |||| | ||| | ||||| | ||| | ||||| ||| ||| || || || || ||||| Sbjct 12518323 CACCACGAAGTCTCAATACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAGAC 12518265 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || | | | |||| |||| ||| || | ||||||||| | ||| | |||||||| || Sbjct 12518264 AAAGGACATCCATCCTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTGATCAGGAGGA 12518205 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| ||||| || | || |||| ||| | | | ||| || | ||| || Sbjct 12518204 ATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTGTCGTATCCGAGGGTTCAACC 12518145 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 12518144 TCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 12518095 Score = 102 bits (112), Expect = 2e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||||| ||| || |||||||| || |||||||| | Sbjct 34352583 CATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 34352524 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || | || ||||| | | ||| || | ||| || || || || | Sbjct 34352523 TATCCTGGATCTTGGTCTTCACATTTTCTGTCATATCCGAGGGTTCAACCTCGAGGGTGA 34352464 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 ||||||| || || | ||||| | || |||||||||| Sbjct 34352463 TGGTTTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 34352425 >seq23159 Length=157549271 Score = 102 bits (112), Expect = 2e-16 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||| ||| ||| || || || || |||| Sbjct 155362260 ACCACCACGAAGTCTCAACACAAGATGAAGGGTAAGCTCCTTTTGA-ATGTTGTAGTCAG 155362202 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || | | |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 155362201 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 155362144 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | ||||| || ||||| || || || |||||||| ||| | ||| | | ||| | Sbjct 155362143 GAATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAA 155362084 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | | || | ||||| || || || || ||||| || || ||||||||||| Sbjct 155362083 CCTTGAGGATGATGGTCTTCCCTGTAAAGGTTTTTATGAAAATCTGCATTTT 155362032 >seq37270 Length=136387465 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | || | ||| | |||||| ||| || || ||| Sbjct 127297580 ATCCCACCTCTGAGACGGAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 127297639 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| ||||||||||| || ||||| || ||||| Sbjct 127297640 GACAGGGTGCGACCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGA 127297699 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || |||| || | || Sbjct 127297700 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCAATAGTGTCACTAGGCTCC 127297759 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| |||||||| | || || | || |||||||| Sbjct 127297760 ACCTCGAGAGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 127297809 >seq9309 Length=24659 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||| ||| || ||||||||||| | ||| || | | |||| | ||||||| | Sbjct 22119 CATCTTCCAGTTGCTTGCCAGCAAAGATAAGTCTTTGCTAACCAGGAAGATTTCCTTCCT 22060 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||||||| ||| | |||||| | ||| || || || || | Sbjct 22059 TATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCTGAAGGTTCAACCTCCAGGGTGA 22000 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| || | | | ||||| ||||| ||||||||||| Sbjct 21999 TGGTCTTCTCTCTAAGAGTTTTTATAAAAATCTGCATTTT 21960 >seq17816 Length=183952662 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || || || ||||| || | | | | || |||| ||| || |||||||||| Sbjct 139841453 CTTTTGA-ATGTTGTAGTCAGACAAAGCACATCCGTCTTCCAGTTGCTTGCCAGCAAAGA 139841511 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| | || ||||| || |||||||| ||||| || || || ||||||||| Sbjct 139841512 TCAGTCTTTACTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGGTTTTACATT-- 139841569 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 | | | ||| | | ||| || || ||||| |||| ||| | | || ||| | || | Sbjct 139841570 TCCTTGTATC-CAAGGTTCAACCTCAAGAGTGATGGCTTTCTCCATAAAGGTTGTTATGA 139841628 Query 192527 ATATCTGCATTTT 192539 | ||||||||||| Sbjct 139841629 AAATCTGCATTTT 139841641 >seq47930 Length=60714840 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | || | ||||| | ||| | || || ||| ||| || || || || |||| Sbjct 7830276 ACCACCACGAATTCTCAATACAAGATGAAGAGGAGACTCCTTTTGA-ATGTTGTAGTCAG 7830218 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | | || ||| |||| |||| | | || ||||||||||| | ||| || |||||||| | Sbjct 7830217 ACAGAGTACGTCCATCTTCCAGT-GCTTGCCAGCAAAGATAAGTCTTTGCTGATCAGGAG 7830159 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||| ||||||| | || || || |||||||| || ||| | | ||| Sbjct 7830158 GAATTCTTTCTTTACCCTGGATCTTGGCCTTTACATTTTCTACCATATCCAAGGGTTCAG 7830099 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | |||| | || |||| |||||| Sbjct 7830098 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTTTGCAGGAAAATCTACATTTT 7830047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983703819047250