Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq42212 140 6e-28 seq25851 122 2e-22 seq45237 118 2e-21 seq1 113 8e-20 seq49093 100 5e-16 seq20726 100 5e-16 seq17816 100 5e-16 seq23159 96.9 6e-15 >seq42212 Length=99152023 Score = 140 bits (154), Expect = 6e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| ||||||| || || | ||| | ||||| ||| || |||||| Sbjct 87790053 TTTCTTAGCACCACCACTAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 87790112 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || || | || || |||||||| || | |||||| || Sbjct 87790113 GTAGTCAGACAAAGTACGTCCATCTTCTAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 87790172 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 87790173 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 87790232 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| ||||| ||||||||||| Sbjct 87790233 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 87790292 >seq25851 Length=153482349 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 83238654 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 83238595 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||||| || Sbjct 83238594 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 83238535 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 | ||| || |||||||| ||||| || || || |||||||| ||| |||| || Sbjct 83238534 ATGAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGA 83238475 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || || ||||| || || | | ||||| ||||| ||||||||||| Sbjct 83238474 GGGTTCAACCTTGAGGGTGATGGTCTTCCCCATAAGGGTTTTCATGAAAATCTGCATTTT 83238415 >seq45237 Length=73212453 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||| || || ||||| | ||||| |||||| |||||| Sbjct 10340786 TTTCTTAGCACCACCACGCGGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATT 10340727 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || | || |||| | | | || |||| ||| || |||||||| || ||| || || Sbjct 10340726 GTAGCCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTG 10340667 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||||| ||||| || || || |||||||| ||| ||||||| Sbjct 10340666 ATCAGGAGGAATTCCTTTCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCTGA 10340607 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 10340606 AGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 10340547 >seq1 Length=229942017 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || | || | ||||| ||| || |||||| Sbjct 142062274 TTTCTTAGCACCACCACGAAGTCTCAAGA-----TGAAGAGTAGACTCCTTTTGAATATT 142062328 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||| | || Sbjct 142062329 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCCGCTG 142062388 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| | |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 142062389 ATCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 142062448 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 142062449 GGGTTCGACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 142062508 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || | || | ||||| ||| || |||||| Sbjct 142066345 TTTCTTAGCACCACCACGAAGTCTCAAGA-----TGAAGAGTAGACTCCTTTTGAATATT 142066399 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || |||||||| || | |||||| || Sbjct 142066400 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTG 142066459 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| | |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 142066460 ATCAGGAAGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 142066519 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | || || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 142066520 GGGTTTGACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 142066579 >seq49093 Length=62736349 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| ||||| | ||| | ||||| ||| || ||| || Sbjct 12518334 TTTCTTAGCAGCACCACGAAGTCTCAATACAAGATGAAGAGTAGACTCCTTTTGAATGTT 12518275 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || | |||||| || | ||| | || Sbjct 12518274 GTAGTCAGACAAAGGACATCCATCCTCCAGTTGCTTGCTAGCAAAGATCAGTCTTTACTG 12518215 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || | || |||| ||| | | ||||| || Sbjct 12518214 ATCAGGAGGAATTCCTTCCTTATCCTGGGTCTTGGCCTTTATATTTTCTGTCGTATCCGA 12518155 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 12518154 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTGAGGGTTTTCACAAAAATCTGCATTTT 12518095 >seq20726 Length=174210431 Score = 100 bits (110), Expect = 5e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || ||||| | ||||| ||| || |||| | Sbjct 115806516 TTTCTTAGCACCACCACGAAGTTTCAACACAAAATGAAGAGTAGACTCCTTTTGAATACT 115806457 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || | ||| || || Sbjct 115806456 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 115806397 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| |||| | Sbjct 115806396 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAA 115806337 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | | || || ||||| || | || || |||| | || ||||||||||| Sbjct 115806336 GGTTTCAGCCTTGAGGGTGATGGTCTTCTCTGTAAAACTTTTCACAAAAATCTGCATTTT 115806277 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 167243 TTATATATATTCCTGATGTATACTTTATATTAAAGTTATTTTGTTCataattaattaaca 167302 ||||||||||||| || ||| ||||||| | ||| || || ||| || | | | Sbjct 119358910 TTATATATATTCCATATATATTATTTATATATTATATATATTATTTATATATATTCCATA 119358851 Query 167303 tgatattatttgtatataatttatatgaattacgaatattatataattttaatgatctat 167362 | ||||||||| ||||| || ||||| | ||| | |||||||||| | || || || ||| Sbjct 119358850 T-ATATTATTTATATATTATATATATTATTTATGTATATTATATATTATTTAT-ATATAT 119358793 Query 167363 tatatatattat 167374 |||||||||||| Sbjct 119358792 TATATATATTAT 119358781 >seq17816 Length=183952662 Score = 100 bits (110), Expect = 5e-16 Identities = 135/186 (73%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || |||| | | |||| |||| ||| || |||||||| || | ||| Sbjct 139841459 AATGTTGTAGTCAGACAAAGCACATCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCT 139841518 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 | |||||||| || |||||||| ||||| || || || ||||||||| | | || Sbjct 139841519 TTACTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGGTTTTACATT--TCCTTGT 139841576 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| | | ||| || || ||||| |||| ||| | | || ||| | ||||| ||||| Sbjct 139841577 ATCCAAGG-TTCAACCTCAAGAGTGATGGCTTTCTCCATAAAGGTTGTTATGAAAATCTG 139841635 Query 172067 CATTTT 172072 |||||| Sbjct 139841636 CATTTT 139841641 >seq23159 Length=157549271 Score = 96.9 bits (106), Expect = 6e-15 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||| ||| || ||| || Sbjct 155362269 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGGGTAAGCTCCTTTTGAATGTT 155362210 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || | | | | | || |||| ||| || |||||||| || | ||| || || Sbjct 155362209 GTAGTCAGACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 155362152 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || ||||| || ||||| || || || |||||||| ||| ||||| | Sbjct 155362151 ATCAGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAA 155362092 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || | ||||| || || || || ||||| ||||| ||||||||||| Sbjct 155362091 GGGTTCAACCTTGAGGATGATGGTCTTCCCTGTAAAGGTTTTTATGAAAATCTGCATTTT 155362032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904439780703000