Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq51122 107 6e-18 seq45237 87.8 5e-12 >seq51122 Length=156195299 Score = 107 bits (118), Expect = 6e-18 Identities = 370/568 (65%), Gaps = 12/568 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || || || | || || |||||||||||||| || | | | | Sbjct 44960057 TTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAGGCT 44959998 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| |||| Sbjct 44959997 TCCTTCTGGACCACGGAAGAGGTGGACCTGTCCAAGGACATTCGGCACTGGGAATCCCTG 44959938 Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | || || | | ||||||| || ||| || | | || ||||| || |||||||| Sbjct 44959937 AAGCCCGAGGAGAGAGATTTTATATCCCATG-TTCTGGTTTTCTTTGCAGCAAGTGATGG 44959879 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || || ||||||||| | || |||| | |||||| | | |||||||| Sbjct 44959878 CATAGTAAATGAAAATTTGGTGGAGCGATTTAGTCAAATAGTTCAGATTACAGAAGCCCG 44959819 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | || ||||| |||||||| || |||||| | ||| | || Sbjct 44959818 CTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCT 44959759 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTA--TTCAACGCCATT--A 133430 ||||| ||||||||||||||| || |||| || || ||||| |||||| | Sbjct 44959758 TATTGACACTTACATCAAAGATCCC--AAAGAAAGGGAATTTATCTTCAATGCCATTGAA 44959701 Query 133431 GCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGC 133490 ||| | |||||| | || ||||| | || ||||| | ||||| |||||| Sbjct 44959700 ACGA--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAG 44959643 Query 133491 GTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTG 133550 || | | || | ||| | || || || |||| |||||| ||| | || || | Sbjct 44959642 AGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAGTAGAAGGCGTCTTCTTTTCCG 44959583 Query 133551 GTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTT 133609 || | || ||| || || || ||||| || || || || | ||||| || ||| Sbjct 44959582 GTTC-TTTTGCATCGATATTCTGGCTCAAGAAACGAGGACCGATGCCTGGCCTCACGTTT 44959524 Query 133610 TCTAACGAACTTATTTCAAGGGACGAGG 133637 || || ||||||||| || || |||| Sbjct 44959523 TCCAATGAACTTATTAGCAGAGATGAGG 44959496 >seq45237 Length=73212453 Score = 87.8 bits (96), Expect = 5e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 7519710 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 7519651 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 7519650 GAAAAAGAACTCAGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 7519591 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||| ||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 7519590 CTCAGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 7519531 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || ||||||||||| || | | | ||| | ||| |||| Sbjct 7519530 AATCCGCTTGCCCTCGACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 7519478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470657193707295