Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq45999 89.7 4e-13 seq45237 82.4 6e-11 >seq45999 Length=10578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||||||| | || |||| | | Sbjct 9050 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATTACCCTGGAGGTGGAGCCCAGT 9109 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || || | || ||| ||||| |||||||||||| | ||| |||||| Sbjct 9110 GACACCATCAAAAATGTGAAAGCCAAGATCCAGGATAAAGAAGGCATCCCCCCCGATCAG 9169 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| || | | || | | ||||||||| Sbjct 9170 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 9229 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || || ||||| || ||||| |||| Sbjct 9230 ATCCAGAAAGAGTCGACCCTGCACCTGGT 9258 >seq45237 Length=73212453 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| | || ||||| ||||| ||| | || |||| | Sbjct 16727090 AAAATGCAGATCTTCGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAGCCC 16727149 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || ||| | || || ||||| ||||| |||||| | ||| || Sbjct 16727150 AGTGACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGAC 16727209 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||||| || || | ||| || || |||||||| || | | || | | |||||| Sbjct 16727210 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTAC 16727269 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| || || ||||| || ||||| |||| || | || |||| || Sbjct 16727270 AACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 16727319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398577659227615