Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq28484 197 2e-45 seq10472 185 1e-41 seq20726 136 5e-27 >seq28484 Length=135191526 Score = 197 bits (218), Expect = 2e-45 Identities = 601/921 (65%), Gaps = 11/921 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 71460293 TTATGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 71460234 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | |||||| Sbjct 71460233 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 71460177 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||| || || || ||| || || || | || || | | ||| Sbjct 71460176 ATGCACACTGAGCGCACATGGACTCCATCGCAGGGTGGGTAGGGAGCACCCTTGGAAACA 71460117 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | || |||||||| || || Sbjct 71460116 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCA 71460057 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | || || || | || | || || | || ||||| Sbjct 71460056 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTTTGGATGGTGGCCCA 71459998 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || ||||| || || | | ||||||||| |||| || ||| Sbjct 71459997 GAGATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTC 71459938 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | ||||| || || |||||||| Sbjct 71459937 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAA 71459878 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| || | |||| | Sbjct 71459877 AAGAGGTGTTTCGAGTGGAGGAAGCGTTTTGACAGTCCCTGTGTTTGTTAGCTTTCCATT 71459818 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 |||||| | | | |||| ||||||| | |||| ||| | | | || || | Sbjct 71459817 AACGACCTCATACCGCTTCTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 71459759 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || |||| ||| || ||| |||| | || || ||||| ||||| |||| Sbjct 71459758 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 71459699 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | || || ||||| || | || ||||| || | || | | | || | Sbjct 71459698 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 71459639 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 | |||| | ||||| || || ||||| || || |||||||| || || || || |||| Sbjct 71459638 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 71459579 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| ||||| ||| | || |||||||| || | Sbjct 71459578 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTGCAGCTA 71459519 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | ||| || | ||||||||| || Sbjct 71459518 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 71459461 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 71459460 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 71459401 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 71459400 TATTGGAAACTCTGCCTCTTC 71459380 >seq10472 Length=202140232 Score = 185 bits (204), Expect = 1e-41 Identities = 236/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || | ||||| ||||| || | || Sbjct 20503405 CATAGACGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGAC 20503464 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| || Sbjct 20503465 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 20503524 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | ||| || || | |||||||| || || || || | Sbjct 20503525 GTCCCAGCTGGGTAATGTTTATCTTGTCTTTATAGGCAGGCTGGATCACCACCCCATGGT 20503584 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| ||||| | Sbjct 20503585 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTTACAA 20503644 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | |||| | | |||| ||||||||| |||| ||||||||||||| || | Sbjct 20503645 TGAGGGCTTCCTGTGCATTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCT 20503704 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 20503705 CTCTTTCATCCTGGGTCACCACTTG 20503729 Score = 107 bits (118), Expect = 2e-18 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| Sbjct 20500871 ACGGTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 20500928 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||| | ||||| ||||| | || || ||||| |||||||| || ||||| Sbjct 20500929 -TCCCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCA 20500987 Query 171623 TTACGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | || ||| | || ||||||||||| || || || | | || ||||| || Sbjct 20500988 TTTGGGTG-AGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAA 20501046 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | | || ||||| | ||||| ||||||||||| || |||| Sbjct 20501047 GACCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 20501090 >seq20726 Length=174210431 Score = 136 bits (150), Expect = 5e-27 Identities = 401/607 (66%), Gaps = 17/607 (3%) Strand=Plus/Minus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || |||| | | Sbjct 97577084 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGGTACTTTG 97577025 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 97577024 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 97576965 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 97576964 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 97576905 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 97576904 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 97576845 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 97576844 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 97576787 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 97576786 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 97576728 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 97576727 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 97576673 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | || || ||||| || ||||| || Sbjct 97576672 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTGA 97576613 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 ||||| | ||| || | || || || || | || || || | || |||| ||| Sbjct 97576612 ATCGCGGCGGTAAGTCAGGGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 97576555 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 97576554 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 97576495 Query 177480 GTAGGTA 177486 ||||| Sbjct 97576494 TGAGGTA 97576488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577987077336000