Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq28484 197 2e-45
seq10472 185 1e-41
seq20726 136 5e-27
>seq28484
Length=135191526
Score = 197 bits (218), Expect = 2e-45
Identities = 601/921 (65%), Gaps = 11/921 (1%)
Strand=Plus/Minus
Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126
||||||| | || ||| || | |||||||| || || | ||| ||| | || |||
Sbjct 71460293 TTATGTCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 71460234
Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186
|| || || |||| ||| || || || ||||| || | || || | ||||||
Sbjct 71460233 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCGAAA 71460177
Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246
| |||||| || ||||| || || || ||| || || || | || || | | |||
Sbjct 71460176 ATGCACACTGAGCGCACATGGACTCCATCGCAGGGTGGGTAGGGAGCACCCTTGGAAACA 71460117
Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306
|| ||||| |||| |||||||| || ||||| | | || |||||||| || ||
Sbjct 71460116 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCA 71460057
Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365
||||| | ||| | | | | || || || | || | || || | || |||||
Sbjct 71460056 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTTTGGATGGTGGCCCA 71459998
Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425
|| | || || || ||||| || || | | ||||||||| |||| || |||
Sbjct 71459997 GAGATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTC 71459938
Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485
|| | ||| | || || || ||| | || | ||||| || || ||||||||
Sbjct 71459937 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACGAAGTAGGCACTGCCAGAAAA 71459878
Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545
| ||| | | ||||| || |||| | || ||||| || | |||| |
Sbjct 71459877 AAGAGGTGTTTCGAGTGGAGGAAGCGTTTTGACAGTCCCTGTGTTTGTTAGCTTTCCATT 71459818
Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604
|||||| | | | |||| ||||||| | |||| ||| | | | || || |
Sbjct 71459817 AACGACCTCATACCGCTTCTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 71459759
Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664
| || |||| ||| || ||| |||| | || || ||||| ||||| ||||
Sbjct 71459758 CCAGGTTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 71459699
Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724
||||| || | || || ||||| || | || ||||| || | || | | | || |
Sbjct 71459698 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 71459639
Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784
| |||| | ||||| || || ||||| || || |||||||| || || || || ||||
Sbjct 71459638 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 71459579
Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844
|||| | |||| ||||||||||| ||||| ||| | || |||||||| || |
Sbjct 71459578 CCAATCGGCTGGCCACAAAGACATTACTAAAACAGGAAGCGATGCCCATCACTGCAGCTA 71459519
Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902
| | ||| || | ||| | || || || | ||| || | ||||||||| ||
Sbjct 71459518 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 71459461
Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962
|||||||||||| | || || | ||| || ||||| || || ||||| |||||||| ||
Sbjct 71459460 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 71459401
Query 162963 TATGGGGAACTCAGCCTCCTC 162983
||| || ||||| ||||| ||
Sbjct 71459400 TATTGGAAACTCTGCCTCTTC 71459380
>seq10472
Length=202140232
Score = 185 bits (204), Expect = 1e-41
Identities = 236/325 (73%), Gaps = 0/325 (0%)
Strand=Plus/Plus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|||||| || || |||| | || || || || || | ||||| ||||| || | ||
Sbjct 20503405 CATAGACGGTGAGGCAGGCTGTTCCTGAGATCTTCCCAAAACCAAAGGTATTGAAGAGAC 20503464
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| ||
Sbjct 20503465 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 20503524
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || |||||||| | | ||| || || | |||||||| || || || || |
Sbjct 20503525 GTCCCAGCTGGGTAATGTTTATCTTGTCTTTATAGGCAGGCTGGATCACCACCCCATGGT 20503584
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||||| ||| |||||||||| ||||| ||| || | |||||||| ||||| |
Sbjct 20503585 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTTACAA 20503644
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| | |||| | | |||| ||||||||| |||| ||||||||||||| || |
Sbjct 20503645 TGAGGGCTTCCTGTGCATTTTGCAGAGAGCATTTTAAGGAAGCAGGTGTGTACAGCTGCT 20503704
Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095
| ||||| || || || ||||| ||
Sbjct 20503705 CTCTTTCATCCTGGGTCACCACTTG 20503729
Score = 107 bits (118), Expect = 2e-18
Identities = 160/224 (71%), Gaps = 5/224 (2%)
Strand=Plus/Plus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|| ||||| | | ||| || |||||||||| ||| | || | ||| ||||||||||
Sbjct 20500871 ACGGTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 20500928
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| ||| | ||||| ||||| | || || ||||| |||||||| || |||||
Sbjct 20500929 -TCCCCACCTGATTCTTAGGGTCTTTGATATGGAGGATGCTGGTAACAGACGTGGTCCCA 20500987
Query 171623 TTACGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681
|| | || ||| | || ||||||||||| || || || | | || ||||| ||
Sbjct 20500988 TTTGGGTG-AGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAA 20501046
Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725
| | || ||||| | ||||| ||||||||||| || ||||
Sbjct 20501047 GACCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATATTTA 20501090
>seq20726
Length=174210431
Score = 136 bits (150), Expect = 5e-27
Identities = 401/607 (66%), Gaps = 17/607 (3%)
Strand=Plus/Minus
Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946
||||||||||||| ||| || | | |||||| |||| | || |||| | |
Sbjct 97577084 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGGTACTTTG 97577025
Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006
| || || | || || | || || | ||| |||||||| | ||| | || | ||||
Sbjct 97577024 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 97576965
Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066
| || || || || || |||| ||| || || | ||||| | || |||| || ||
Sbjct 97576964 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 97576905
Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126
|||||| ||||| || || || ||| |||| | || || ||||| | ||||| ||||
Sbjct 97576904 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 97576845
Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184
|||| | ||||| ||| || || || | | ||| | ||| ||||| | | | |
Sbjct 97576844 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 97576787
Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243
||| || ||| || || ||| ||| || ||||| ||| || || || || | |
Sbjct 97576786 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 97576728
Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302
| || |||||| || || || |||||||| || ||||| |||||||| || ||
Sbjct 97576727 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 97576673
Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361
||| | || || | | | || | ||| | | || || ||||| || ||||| ||
Sbjct 97576672 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCGTAAGGCACTTGGATATCTGA 97576613
Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419
||||| | ||| || | || || || || | || || || | || |||| |||
Sbjct 97576612 ATCGCGGCGGTAAGTCAGGGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGA 97576555
Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCC 177479
||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || |
Sbjct 97576554 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGC 97576495
Query 177480 GTAGGTA 177486
|||||
Sbjct 97576494 TGAGGTA 97576488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577987077336000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |