Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq20726 107 6e-20
seq47930 98.7 3e-17
seq39285 98.7 3e-17
seq37270 98.7 3e-17
seq36523 98.7 3e-17
>seq20726
Length=174210431
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 29739717 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 29739658
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 29739657 TCCCGGGTTTCGGC 29739644
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 29716929 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 29716870
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 29716869 CCGGGTTTCGGC 29716858
Score = 102 bits (112), Expect = 3e-18
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGAT-CTAAAGGTCCCTGGTTCAAC 2827
|||||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct 29690136 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATGTTAAAGTTCCCTGGTTCAAC 29690077
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||||||
Sbjct 29690076 CCCGGGTTTCAGC 29690064
Score = 96.9 bits (106), Expect = 1e-16
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 29901560 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGG 29901501
Query 2833 GCTTCAGC 2840
| ||| ||
Sbjct 29901500 GTTTCGGC 29901493
Score = 95.1 bits (104), Expect = 4e-16
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||| |
Sbjct 29755599 GCCGAAATAGCTGAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 29755540
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 29755539 CCGGGTTTCGGC 29755528
>seq47930
Length=60714840
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1320259 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1320200
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1320199 CCGGGTTTCGGC 1320188
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1322141 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1322082
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1322081 CCGGGTTTCGGC 1322070
>seq39285
Length=117095149
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 96794351 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 96794292
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 96794291 CCGGGTTTCGGC 96794280
>seq37270
Length=136387465
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 127313544 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 127313485
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 127313484 CCGGGTTTCGGC 127313473
>seq36523
Length=132107971
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 16977158 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 16977217
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 16977218 CCGGGTTTCGGC 16977229
Score = 91.5 bits (100), Expect = 5e-15
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||| ||| |||||||||||||||||||||||||||||| ||
Sbjct 16968284 GCCGAAATAGCTCAGTTGGGAAAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGACA 16968343
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 16968344 CCGGGTTT 16968351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15838932600075
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |