Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq20726 107 6e-20 seq47930 98.7 3e-17 seq39285 98.7 3e-17 seq37270 98.7 3e-17 seq36523 98.7 3e-17 >seq20726 Length=174210431 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 29739717 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 29739658 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 29739657 TCCCGGGTTTCGGC 29739644 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 29716929 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 29716870 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29716869 CCGGGTTTCGGC 29716858 Score = 102 bits (112), Expect = 3e-18 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGAT-CTAAAGGTCCCTGGTTCAAC 2827 |||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||||||| Sbjct 29690136 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATGTTAAAGTTCCCTGGTTCAAC 29690077 Query 2828 CCCGGGCTTCAGC 2840 |||||| |||||| Sbjct 29690076 CCCGGGTTTCAGC 29690064 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 29901560 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGG 29901501 Query 2833 GCTTCAGC 2840 | ||| || Sbjct 29901500 GTTTCGGC 29901493 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||| |||||||||||| ||||||||||||||| |||||||||||||||| | Sbjct 29755599 GCCGAAATAGCTGAGTTGGGAGAGCGTTAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 29755540 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29755539 CCGGGTTTCGGC 29755528 >seq47930 Length=60714840 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1320259 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1320200 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1320199 CCGGGTTTCGGC 1320188 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1322141 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1322082 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1322081 CCGGGTTTCGGC 1322070 >seq39285 Length=117095149 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 96794351 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 96794292 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 96794291 CCGGGTTTCGGC 96794280 >seq37270 Length=136387465 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 127313544 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 127313485 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 127313484 CCGGGTTTCGGC 127313473 >seq36523 Length=132107971 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 16977158 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 16977217 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 16977218 CCGGGTTTCGGC 16977229 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||| ||| |||||||||||||||||||||||||||||| || Sbjct 16968284 GCCGAAATAGCTCAGTTGGGAAAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGACA 16968343 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 16968344 CCGGGTTT 16968351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15838932600075