Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq10472 269 3e-67 seq46691 154 2e-32 seq1 150 2e-31 seq47930 141 1e-28 seq11669 86.0 7e-12 >seq10472 Length=202140232 Score = 269 bits (298), Expect = 3e-67 Identities = 253/322 (79%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | |||||||| Sbjct 20503729 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACACCTGCTTCCTTAAAATGCTCT 20503670 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| | || ||||| || |||||||||| || | | ||| Sbjct 20503669 CTGCAAAATGCACAGGAAGCCCTCATTGTAACATGGCAGAAAAAGAAAGCTGTAAGCCCA 20503610 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||| ||| Sbjct 20503609 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAAGAC 20503550 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 20503549 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 20503490 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| | |||||| ||||| Sbjct 20503489 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCA 20503430 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||||||| ||| Sbjct 20503429 GGAACAGCCTGCCTCACCGTCT 20503408 Score = 116 bits (128), Expect = 4e-21 Identities = 214/311 (69%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 8603 CCCTGTGGTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAG 8662 ||||| |||||| |||||||| | | || || | ||||||| ||||| | | Sbjct 100293421 CCCTGCTGTACTCCCTGGTGTTCATTGTGGGCCTCTTGGGCAATGTGGTGGTGGTGATGA 100293362 Query 8663 TCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCC 8722 |||||||||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| Sbjct 100293361 TCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCA 100293302 Query 8723 TTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAA 8782 || ||||| || | | |||||||| || || ||||| |||| || |||| | Sbjct 100293301 TTTCGGACCTACTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT--ATGTCAGGGG--A 100293246 Query 8783 CTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGG 8842 | | |||| || ||| |||||||||| | | || ||| || | Sbjct 100293245 C--ATAACTGGGTTTTCGGCCATGGCATGTGTAAGCTCCTCTCAGGGTTTTATCACACAG 100293188 Query 8843 CACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTG 8902 |||||||||| || | || || |||||| |||| | |||||||| || || ||| Sbjct 100293187 GCTTGTACAGCGAGATCTTTTTCATAATCCTGCTGACGATCGACAGGTACCTGGCCATTG 100293128 Query 8903 TGTACGCGGTG 8913 | |||||||| Sbjct 100293127 TCCACGCGGTG 100293117 Score = 84.2 bits (92), Expect = 3e-11 Identities = 216/326 (66%), Gaps = 11/326 (3%) Strand=Plus/Minus Query 9091 ATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCTGCTACTGGAAAATC 9150 |||||||| || || | || ||| |||| | |||||| |||||||| |||| Sbjct 100292927 ATGACCATCTTCTGTCTTGTTCTCCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATC 100292868 Query 9151 ATCAAGGTCCTCCTCAAGGCCCACAACAGGTCGAGAAACCTGCACG-CCGTCAAGCTCAT 9209 ||||| || || | | || || || | ||| | || | || || |||||| Sbjct 100292867 ATCAAAACGCTGCTGAGGTGCCCCA----GTAAAAAAAAGTACAAGGCCATCCGGCTCAT 100292812 Query 9210 TTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACGTCCTGCTCATTTT 9269 ||| |||| ||| | | | ||| | || |||| |||||||| || || || | Sbjct 100292811 TTTTGTCATCATGGCGGTGTTTTTCATTTTCTGGACACCCTACAATGTGGCTATCCTTCT 100292752 Query 9270 ACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGCGCAGGG---TGGA 9326 |||| ||| | | ||||| |||||||| |||| ||| | |||| Sbjct 100292751 CTCTTCCTATCAATCCATCTTATTTGGAAATGACTGTGA---GCGGAGCAAGCATCTGGA 100292695 Query 9327 CATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCGTCAT 9386 | ||| | | ||||| | ||| ||||||||| | ||||||||||||| ||||| || || Sbjct 100292694 CCTGGTCTTGCTGGTGACAGAGGTGATCGCCTACTCCCACTGCTGCGTGAACCCGGTGAT 100292635 Query 9387 CTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||| ||||| || || | ||||| Sbjct 100292634 CTACGCCTTTGTTGGAGAGAGGTTCC 100292609 >seq46691 Length=94050890 Score = 154 bits (170), Expect = 2e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 32059104 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAA 32059163 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 32059164 AGGCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 32059223 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||||||||| Sbjct 32059224 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 32059268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 32063304 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTG 32063363 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||| Sbjct 32063364 GAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCC 32063423 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 |||| || ||||| |||| | ||||| ||| ||| || Sbjct 32063424 TTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTGGAAGA 32063463 >seq1 Length=229942017 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 43407673 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 43407732 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| || || ||| ||||| ||||||||||| |||| Sbjct 43407733 TGCCCCAAGCTGAGAACCA------------AGACCCAGACATCAAGGAGCATGTGAACT 43407780 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || |||||||| | ||| ||||||||| ||| Sbjct 43407781 CCCTGGGGGAGAACCTGAAGACCCTCATGCTGACGCTGCGGCGCTGT 43407827 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| |||||||||||| |||||||||| | |||| ||||||| ||||||||| Sbjct 43407319 CAAATGAAGGATCAGCTGGACAACTTGTTGTTAAAGGAGTCCTTGCTGGAGGACTTTAAG 43407378 Query 178233 G 178233 | Sbjct 43407379 G 43407379 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || | |||||||| ||||| |||||||| || || || ||||||| Sbjct 43410191 AGCTCCAAGAGAAAGGCATCTACAAAGCCATGAGCGAGTTTGACATCTTCATCAACTACA 43410250 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 43410251 TAGAAGCCTACATGACAA 43410268 >seq47930 Length=60714840 Score = 141 bits (156), Expect = 1e-28 Identities = 181/248 (73%), Gaps = 1/248 (0%) Strand=Plus/Plus Query 146872 ATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACG 146931 || |||||||| ||||| |||| || | || |||||||||||||| | | | Sbjct 36491691 ATTTTGAGCTTTGGGAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTTGCAATG 36491750 Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 || | ||||| || | | | || |||| || || | ||||| || ||||| ||| | Sbjct 36491751 TGACTCAGGTAAACATACACATCTCCCAAAGTATGTGCGAAGTCACCAGGCTTTAGGTCC 36491810 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 || | ||| | | || || |||||||| | |||||||| |||||||||| | | ||| Sbjct 36491811 GTGATGTGTGTGATCACATAAGTGAGCAGGGCGTAGCTGGTGATGTTGAAGGTG-CACCC 36491869 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 |||||| |||| || |||||||||| ||||||||| || ||||| |||| ||||| | Sbjct 36491870 AGGCCCCTGTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACCACGAAG 36491929 Query 147112 AACTGGCA 147119 |||||||| Sbjct 36491930 AACTGGCA 36491937 >seq11669 Length=70506 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 8611 TACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCATA 8670 ||||| |||||||| | ||||| | | ||||| ||||| ||||| || | ||| Sbjct 49284 TACTCACTGGTGTTCATCTTTGGTTTTGTGGGCAACATGCTGGTCATCCTCATCTTGATA 49343 Query 8671 AAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGAC 8730 || | ||| ||||| | || |||||| |||||| |||| ||||||||||| | |||| Sbjct 49344 AACTGCAAAAGGCTGAAGAGCATGACTGACATCTACCTGCTCAACCTGGCCATCTCTGAC 49403 Query 8731 CTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | || | || ||||||| ||| ||||| Sbjct 49404 CTGTTTTTCCTTCTTACTGTCCCCTTCTGGGCTCACT 49440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583039188324000