Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq51122 369 5e-97 seq5641 138 2e-27 seq1 134 2e-26 seq25851 116 5e-21 seq36523 109 8e-19 >seq51122 Length=156195299 Score = 369 bits (408), Expect = 5e-97 Identities = 643/934 (69%), Gaps = 11/934 (1%) Strand=Plus/Plus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326 |||| |||||| ||||||| | |||| ||| ||| | | ||||| |||||||| Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || || | |||| || || ||||| ||| || ||| ||||| | Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44959243 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| || | | | | || |||| || | ||| || | Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||||| || |||||| ||||| | | |||||||| || ||||| | Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || || | ||| || | || || | | ||||| Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTT 44959423 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | | ||| ||| || | | || | | ||||| ||||| ||||| || || | Sbjct 44959424 CTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAAT 44959483 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| ||||||||||| ||||| | ||| || ||||| ||||| |||||||| Sbjct 44959484 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCG 44959543 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||||| || |||||||||| |||||||| Sbjct 44959544 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTA 44959603 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| || || || |||| | || || || | | || || | ||||| | Sbjct 44959604 CTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCA 44959663 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||||| ||||||||||| ||||| || ||||| |||| | | | Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 |||| | |||||| | || || || || | |||||||||||||| ||||| | Sbjct 44959724 CCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 44959783 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || ||||| | ||||| ||||| || || | Sbjct 44959784 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATTT 44959843 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 || ||||| ||| ||||||||||||| ||||| |||||||| || ||||| || ||| Sbjct 44959844 GACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACCA 44959903 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||| | | || ||||| ||| | ||||| || || | Sbjct 44959904 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCCT 44959963 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || ||||| | ||||| || || ||||| ||||| || ||||| | || Sbjct 44959964 TGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCC 44960023 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | || || || || ||||| Sbjct 44960024 AGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057 Score = 190 bits (210), Expect = 3e-43 Identities = 397/590 (67%), Gaps = 36/590 (6%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 144142949 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 144142890 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || |||||||| ||||| |||||||| ||||||||||| Sbjct 144142889 GCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAA 144142830 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | | | ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 144142829 GGTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCT-TTGTTCC 144142771 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| ||||| | || |||||||| |||| |||||||||||| || |||| Sbjct 144142770 CAATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCAT 144142712 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||| | | |||| | |||||||| |||||| || || | ||| ||| | Sbjct 144142711 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTA 144142654 Query 39912 TTTCT--------------------------GAATGGATGTTTTCAATCGCCATCTGAAA 39945 ||||| ||||| |||||||| || || || || || Sbjct 144142653 TTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAA 144142594 Query 39946 TCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC-TGAACAAAATCTTTCCGCCAAAT 40004 ||| || || || | ||| ||||| || || || ||||| |||| |||| |||| | Sbjct 144142593 TCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAAC-AAATTGTTCCACCAAGT 144142535 Query 40005 TTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATT 40064 |||||| | ||| ||||||| || ||||| || |||| | ||| ||||||| | Sbjct 144142534 TTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTC 144142475 Query 40065 TTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAG 40124 |||| || || ||| | ||||| || || || || | || || || | | Sbjct 144142474 TTTCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGG 144142415 Query 40125 CTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGA 40174 | |||| || || ||||| | || | ||||| ||||| |||||| || Sbjct 144142414 CCATCCAGAAAGAAACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365 >seq5641 Length=113028656 Score = 138 bits (152), Expect = 2e-27 Identities = 106/126 (84%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| |||||||||||||| |||||||| || || || || | Sbjct 102562830 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 102562889 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 102562890 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 102562949 Query 39759 CAACAA 39764 | |||| Sbjct 102562950 CTACAA 102562955 >seq1 Length=229942017 Score = 134 bits (148), Expect = 2e-26 Identities = 241/348 (69%), Gaps = 13/348 (4%) Strand=Plus/Minus Query 39718 AAAAGATCCAGAA-AAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGT 39776 |||||| |||| |||||||| ||||| ||||| ||||| || |||| | || || | Sbjct 89927035 AAAAGA---AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCAT 89926979 Query 39777 AACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAG 39833 | | | || || | || || || ||||||| || |||||| ||||||| Sbjct 89926978 AGGTAGCCTCTTTGTCCCCAATACAACTCAAGGCCCAATTTGC---CTTCTTGACACAAG 89926922 Query 39834 GCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTAT 39893 | |||||| || | || |||||| | | |||| | |||||| | || || | Sbjct 89926921 G---TGTTTCAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGT 89926865 Query 39894 CTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAA 39953 | || | |||||||||||||| ||||| ||||||| || || || || || | || | Sbjct 89926864 CAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGA 89926805 Query 39954 AACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCA 40013 |||| ||||| ||||| || || ||| | ||||| ||| |||| |||||||| | Sbjct 89926804 AACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTA 89926745 Query 40014 CTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAAT 40061 |||| |||||||| || ||||| || |||| ||| | ||||||| Sbjct 89926744 CTATCCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAAT 89926697 >seq25851 Length=153482349 Score = 116 bits (128), Expect = 5e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 108797162 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 108797221 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| | |||||||| || ||||| || Sbjct 108797222 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGGCC 108797281 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 108797282 ACCACTCTTTCCCC 108797295 >seq36523 Length=132107971 Score = 109 bits (120), Expect = 8e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || |||||||| || | Sbjct 66640842 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGA 66640901 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 66640902 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 66640961 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 66640962 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 66641009 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 66623542 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 66623601 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 66623602 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 66623661 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 66623662 TCCAGGTAAATAGC 66623675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 69829 CCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCC 69888 |||| |||||| || || | || |||||| ||| | || | ||| |||||||| || Sbjct 66627559 CCAGCAATATAGCTGCCAGTAGCCCGAATACAACTCACAGCAACACCAATTCCTCCAGCA 66627618 Query 69889 ATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCT 69948 ||||| || | ||||| | || | |||||||| || || || ||||| |||||| Sbjct 66627619 GACTTAGAAATCAATGCACATTGCTTTAGAGTGTCATAAATGCCTTCAATGCTGTCATCT 66627678 Query 69949 ATCATGTTAAGAAGAAAACAGCTA 69972 |||| | ||||||||||||||| Sbjct 66627679 TTCATACTCAGAAGAAAACAGCTA 66627702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686380438337400