Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq51122 284 1e-71 seq1 140 3e-28 seq5641 113 4e-20 seq20726 104 2e-17 seq46691 95.1 1e-14 seq13964 87.8 1e-12 seq25851 86.0 5e-12 seq45237 84.2 2e-11 >seq51122 Length=156195299 Score = 284 bits (314), Expect = 1e-71 Identities = 618/917 (67%), Gaps = 25/917 (3%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | || ||| || | | | |||||| | || || || | || ||||| || |||| Sbjct 44960080 TGCTGAGAGGAAACCCCTGTCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 44960021 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || |||| || || ||||| | ||||| || || || | || | Sbjct 44960020 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACGGAAGAGGTGGACCTGTCCAAGG 44959961 Query 43797 ACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || | |||| | ||| | | | || || | || | | |||||||||| ||| | Sbjct 44959960 ACATTCGGCAC-TGGGAATCCCTGAAGCCCG-AGGAGAGAGATTTTATATCCCATGTTCT 44959903 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||||||||| || ||| || Sbjct 44959902 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGTCA 44959843 Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 | |||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 44959842 AATAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 44959784 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | ||||| |||||||| ||||| || || || || |||||||||||| | || | | Sbjct 44959783 TACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAGGG 44959724 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 | | || ||||| || ||||| | ||| | || | || ||||| |||||| Sbjct 44959723 AATTTATCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCT 44959664 Query 44094 TTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 | ||||| | | | | | | | ||| ||||| |||| || || || | | Sbjct 44959663 TGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAG 44959604 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 | |||||| | |||||||| || || ||||| | ||||| ||| | ||||||||||| Sbjct 44959603 TAGAAGGCGTCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGAC 44959544 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 ||||||||| | |||||||| ||||| | || || | ||||| || ||||| || | Sbjct 44959543 CGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTG 44959484 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330 |||||||||||||| | | | | || | | || || | || ||| | | | Sbjct 44959483 ATTTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAAACATCGGAGGAGAGAGTGA 44959427 Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390 ||| || || | | || || |||||||||| ||||| | || || || |||| Sbjct 44959426 GAGAAATAATTATCAATGCTGTTCAGATAGAACAGGAATTCCTCACCGAGGCCTTGCCTG 44959367 Query 44391 TAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450 | || | || || |||||| | | ||||| ||||| ||||| | | ||||| Sbjct 44959366 TGAAGCTCATTGGGATGAATTGCGCTCTAATGAAGCAATACATTGAGTTTGTGGCAGACA 44959307 Query 44451 GTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGAT 44506 | | | |||||||||||| | | || | || ||| | | ||| ||||| Sbjct 44959306 GACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGAC 44959251 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 |||||||| |||||||| || ||| || ||||| ||||| | | || || || Sbjct 44959250 TTTATGGAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGAGAGTAGGCGAG 44959196 Query 44567 TATCAGCGAATGGGCGT 44583 |||||| | ||||| || Sbjct 44959195 TATCAGAGGATGGGAGT 44959179 Score = 127 bits (140), Expect = 2e-24 Identities = 385/594 (65%), Gaps = 38/594 (6%) Strand=Plus/Plus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||| ||||||| | |||| | ||| || || |||| || | || || Sbjct 144142365 TCATGATATTTGGAAAATGTATAGGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAGGT 144142424 Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || || | || ||| || |||| ||| || | || || | |||| ||||||| Sbjct 144142425 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGACATTTT 144142482 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 ||||| || |||| || ||||| || | || |||||| | ||||||| ||||| Sbjct 144142483 ATATCCCATATTCTGGCTTTCTTTGCAGCATGTGATGGGATAATAGATGAAAACTTGGTG 144142542 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 | |||| ||||||||||| |||| ||||| | || || ||||| || ||||| Sbjct 144142543 GAACAATTTGTTCAAGAAGTTCAGATTA-CAGAAACCTTCTGCTTCTATGGATTCCAAAT 144142601 Query 43960 TGCCATAGAAAATATTCATTC--------------------------GGAAATGTACAGT 43993 ||| |||||||| || ||||| ||||| | | | Sbjct 144142602 TGCTATAGAAAACATACATTCTTTAAGAGAACATACATTCAATAAGGAGAAATAAATAAT 144142661 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA 44053 || || || || || | || |||||| | || | | | | || ||||| || Sbjct 144142662 CTCCTTATTGACAC--ATATTAAAGATAACAAAGAAAGGGAATTTCTCTTCAATGCCATT 144142719 Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCA 44110 |||||| | |||| | | || | || |||| |||| | | ||||| || | Sbjct 144142720 GAAACAATGCCTGTG-TCAAGAAGAAGGCAGGTTGGGTCTTCTGTTGGATTGGGAACAAA 144142778 Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | | | | ||||||||| ||| || ||||| | |||||| | | |||||||| Sbjct 144142779 GACGTTACCCATGGAGAACGTGTTGCAGCCTTTGCCCTAGTGGAAAGTACCTTCTTTTCT 144142838 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || ||||| ||||| ||| | ||||||| ||| |||||||||| | || ||| Sbjct 144142839 GGTTCTTTTGCATTGATATTCTGGCTCAAGAAACAAGGACTGATGCCTGGCCTCACATTT 144142898 Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||||| | || || ||||||| || ||||| || | ||||||||| || Sbjct 144142899 TCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACTTTGCTTGCCTG 144142952 >seq1 Length=229942017 Score = 140 bits (154), Expect = 3e-28 Identities = 144/186 (77%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895 |||||||||| ||| |||| || ||||| || || || |||||||| |||||||| | Sbjct 89926697 ATTTTATATCCCGTGTTCTGGCTTTCTTTGCAGCAAGTGATGGGATAGTAAATGAAAACT 89926756 Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| ||||||||||| |||| ||||||| | ||||| |||| || Sbjct 89926757 TGGTGGAGCGATTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCACTGTTTCTATGACTTC 89926815 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 ||||||||||| ||||| | ||||| |||||||| ||||| || || || || ||||| Sbjct 89926816 CAAATTGCCATGGAAAACACACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA 89926875 Query 44015 AAAGAT 44020 |||||| Sbjct 89926876 AAAGAT 89926881 >seq5641 Length=113028656 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 102565330 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 102565272 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 102565271 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 102565223 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| |||| || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 102562965 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 102562906 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 102562905 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTT 102562846 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 102562845 ATTAGCAGAGATGA 102562832 >seq20726 Length=174210431 Score = 104 bits (114), Expect = 2e-17 Identities = 253/380 (67%), Gaps = 9/380 (2%) Strand=Plus/Minus Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275 ||| | || || ||||||| || | |||| || ||| | ||||| | || || ||| Sbjct 30002901 GTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACTTGTATTTTTGGGTTTGGAC 30002842 Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331 |||||||| ||||| | | || |||||||||||| ||| |||| | || || Sbjct 30002841 AATGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 30002786 Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391 | || ||| |||||||||| || ||| | |||| ||||||||| || || |||| || Sbjct 30002785 TGTTCCAACACTACATCCGACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 30002726 Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451 |||||| | || ||||||| ||||| || | || |||||| | | | | | Sbjct 30002725 TTTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTGTCTCCCAGCAAT 30002666 Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511 | ||| || |||| | | || || | ||||||| || | || | || | ||| | Sbjct 30002665 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGT 30002606 Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571 || | |||| || | | |||||| | || | |||| || || | | ||||| Sbjct 30002605 TGAGCTTAATGCTTTAATCACTGATGAAATAATATCCAATGTGCCAATCCTTATCTTGGG 30002546 Query 47572 CAATAAAATCGACA-AACAA 47590 || ||||| |||| ||||| Sbjct 30002545 TAACAAAATAGACAGAACAA 30002526 >seq46691 Length=94050890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| |||| || || ||| | || ||||| || || || |||| |||| Sbjct 32059270 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 32059211 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || |||| || ||||| || |||||||| ||||| || || || ||||| || | Sbjct 32059210 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 32059151 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | || || ||||||||||| |||||||| ||| Sbjct 32059150 GCTACGCCCTGCTCACGTACATGATTGCGCAC 32059119 >seq13964 Length=198332218 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 47222 CAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCA 47281 |||||| ||||||| | | ||||| || ||| | ||||| | || ||| ||||| || Sbjct 124924312 CAATTTCTAGGACTCAACAAGAAATCTGGAAAACTTTTATTCTTAGGTTTAAACAATACA 124924371 Query 47282 GGAAAAACGGCATTACTC--CACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTA 47339 || ||||| |||| || |||||| ||||| | | | || |||||| || | Sbjct 124924372 GGCAAAAC--CATTCTTCTTCACATGATCAAAGATGACAGATTGGGCCAGCATATTCCAA 124924429 Query 47340 CATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATT 47399 || |||||| ||| || || | |||||||||||||| || || |||| || ||||| Sbjct 124924430 CACTACATCTGACATCAAAAGAGCTAACAATTGCTGGAATGACTTTTACAACTTTTGACC 124924489 Query 47400 TAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATT 47438 | || ||| ||||| || || | ||| |||||| Sbjct 124924490 TTGGTCAGCACGAGCAAGCATGTCGAGTTTGGAAAAATT 124924528 >seq25851 Length=153482349 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 108786674 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 108786615 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 108786614 AACGAGTTTCGGAGTATCAGCG 108786593 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 108810570 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 108810511 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 108810510 CTTCCTTCTGGACAGCAGAAGAGGT 108810486 >seq45237 Length=73212453 Score = 84.2 bits (92), Expect = 2e-11 Identities = 177/264 (67%), Gaps = 0/264 (0%) Strand=Plus/Plus Query 77419 AACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTT 77478 |||||| ||||| | |||||| || || ||||| |||||||| || | ||||| || || Sbjct 20152355 AACCCAGTTAGTTATACCATTTATCGTAAACATACTGTCTGTATACAGAACCAGTTTATT 20152414 Query 77479 GATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTG 77538 ||| || | || ||||||| | |||||| | || || || ||||| || | || Sbjct 20152415 GATGTTCTGAGTCTTTGCTTGTTCAATGGCTTTGCAGGCTGCATGAATTTCCGCTCTTTG 20152474 Query 77539 GTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAATA 77598 ||||||||| |||| ||||| | |||| | || || ||||| || Sbjct 20152475 GTTTGTCTGCCGCCCAGGAAGTCTAATGCCTACATCTAAAGGATGGCCCGGCCCCCAGTA 20152534 Query 77599 TACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGTA 77658 | || || || ||||| | | | | || || |||| ||||| |||||||| Sbjct 20152535 AAAGCGGATTCCTGCTCGTGACCTTCTACGCCCATTACTGGAGCAGCAGCCATCAGTGTA 20152594 Query 77659 GACCACCACGGCGTCACCCATGTA 77682 ||| || ||| ||| |||||||| Sbjct 20152595 GACGACGACGAAGTCTCCCATGTA 20152618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 43066682 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 43066623 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||||||||| || | ||||| ||| | Sbjct 43066622 AGCATGGCTGGTAGCACGGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATT 43066563 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || ||||| | || || || || || |||| ||||| ||| Sbjct 43066562 GATGGTGTGGAGCAGCTAAACAACATCCTAGTCATTGGTATG 43066521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397157924767675