Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 284 1e-71
seq1 140 3e-28
seq5641 113 4e-20
seq20726 104 2e-17
seq46691 95.1 1e-14
seq13964 87.8 1e-12
seq25851 86.0 5e-12
seq45237 84.2 2e-11
>seq51122
Length=156195299
Score = 284 bits (314), Expect = 1e-71
Identities = 618/917 (67%), Gaps = 25/917 (3%)
Strand=Plus/Minus
Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736
|||| | || ||| || | | | |||||| | || || || | || ||||| || ||||
Sbjct 44960080 TGCTGAGAGGAAACCCCTGTCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 44960021
Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796
| ||||| || || || |||| || || ||||| | ||||| || || || | || |
Sbjct 44960020 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCACGGAAGAGGTGGACCTGTCCAAGG 44959961
Query 43797 ACTTA--GCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854
|| | |||| | ||| | | | || || | || | | |||||||||| ||| |
Sbjct 44959960 ACATTCGGCAC-TGGGAATCCCTGAAGCCCG-AGGAGAGAGATTTTATATCCCATGTTCT 44959903
Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914
|| || ||||| || || || || ||||| |||||||||||||| || ||| ||
Sbjct 44959902 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGGTGGAGCGATTTAGTCA 44959843
Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973
| |||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| |
Sbjct 44959842 AATAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 44959784
Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033
| ||||| |||||||| ||||| || || || || |||||||||||| | || | |
Sbjct 44959783 TACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATCAAAGATCCCAAAGAAAGGG 44959724
Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093
| | || ||||| || ||||| | ||| | || | || ||||| ||||||
Sbjct 44959723 AATTTATCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCT 44959664
Query 44094 TTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150
| ||||| | | | | | | | ||| ||||| |||| || || || | |
Sbjct 44959663 TGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAACGTGTTGTAGCCTTCGCTGCAG 44959604
Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210
| |||||| | |||||||| || || ||||| | ||||| ||| | |||||||||||
Sbjct 44959603 TAGAAGGCGTCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGGCTCAAGAAACGAGGAC 44959544
Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270
||||||||| | |||||||| ||||| | || || | ||||| || ||||| || |
Sbjct 44959543 CGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTG 44959484
Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330
|||||||||||||| | | | | || | | || || | || ||| | | |
Sbjct 44959483 ATTTTGCTTGCTTGATGTTCAAACACCTGGTACAC---AAAACATCGGAGGAGAGAGTGA 44959427
Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390
||| || || | | || || |||||||||| ||||| | || || || ||||
Sbjct 44959426 GAGAAATAATTATCAATGCTGTTCAGATAGAACAGGAATTCCTCACCGAGGCCTTGCCTG 44959367
Query 44391 TAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450
| || | || || |||||| | | ||||| ||||| ||||| | | |||||
Sbjct 44959366 TGAAGCTCATTGGGATGAATTGCGCTCTAATGAAGCAATACATTGAGTTTGTGGCAGACA 44959307
Query 44451 GTTTACTTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGAT 44506
| | | |||||||||||| | | || | || ||| | | ||| |||||
Sbjct 44959306 GACTTATGCTGGAACTGGGTT----TTAGCAAGGTTTTCGGAGTAGAGAGCCCATTTGAC 44959251
Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566
|||||||| |||||||| || ||| || ||||| ||||| | | || || ||
Sbjct 44959250 TTTATGGAGAATATTTCACTGAAAG-----ACTAACTTCTTTGAGAGGAGAGTAGGCGAG 44959196
Query 44567 TATCAGCGAATGGGCGT 44583
|||||| | ||||| ||
Sbjct 44959195 TATCAGAGGATGGGAGT 44959179
Score = 127 bits (140), Expect = 2e-24
Identities = 385/594 (65%), Gaps = 38/594 (6%)
Strand=Plus/Plus
Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782
|||||| || ||| ||||||| | |||| | ||| || || |||| || | || ||
Sbjct 144142365 TCATGATATTTGGAAAATGTATAGGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAGGT 144142424
Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840
|| || | || ||| || |||| ||| || | || || | |||| |||||||
Sbjct 144142425 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGACATTTT 144142482
Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900
||||| || |||| || ||||| || | || |||||| | ||||||| |||||
Sbjct 144142483 ATATCCCATATTCTGGCTTTCTTTGCAGCATGTGATGGGATAATAGATGAAAACTTGGTG 144142542
Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959
| |||| ||||||||||| |||| ||||| | || || ||||| || |||||
Sbjct 144142543 GAACAATTTGTTCAAGAAGTTCAGATTA-CAGAAACCTTCTGCTTCTATGGATTCCAAAT 144142601
Query 43960 TGCCATAGAAAATATTCATTC--------------------------GGAAATGTACAGT 43993
||| |||||||| || ||||| ||||| | | |
Sbjct 144142602 TGCTATAGAAAACATACATTCTTTAAGAGAACATACATTCAATAAGGAGAAATAAATAAT 144142661
Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA 44053
|| || || || || | || |||||| | || | | | | || ||||| ||
Sbjct 144142662 CTCCTTATTGACAC--ATATTAAAGATAACAAAGAAAGGGAATTTCTCTTCAATGCCATT 144142719
Query 44054 GAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCA 44110
|||||| | |||| | | || | || |||| |||| | | ||||| || |
Sbjct 144142720 GAAACAATGCCTGTG-TCAAGAAGAAGGCAGGTTGGGTCTTCTGTTGGATTGGGAACAAA 144142778
Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170
| | | | ||||||||| ||| || ||||| | |||||| | | ||||||||
Sbjct 144142779 GACGTTACCCATGGAGAACGTGTTGCAGCCTTTGCCCTAGTGGAAAGTACCTTCTTTTCT 144142838
Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230
|| || ||||| ||||| ||| | ||||||| ||| |||||||||| | || |||
Sbjct 144142839 GGTTCTTTTGCATTGATATTCTGGCTCAAGAAACAAGGACTGATGCCTGGCCTCACATTT 144142898
Query 44231 TCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| ||||| | || || ||||||| || ||||| || | ||||||||| ||
Sbjct 144142899 TCCAATGAACTTATTAGCAGTGATGAGGGTTTACACTGTTACTTTGCTTGCCTG 144142952
>seq1
Length=229942017
Score = 140 bits (154), Expect = 3e-28
Identities = 144/186 (77%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 43836 ATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATT 43895
|||||||||| ||| |||| || ||||| || || || |||||||| |||||||| |
Sbjct 89926697 ATTTTATATCCCGTGTTCTGGCTTTCTTTGCAGCAAGTGATGGGATAGTAAATGAAAACT 89926756
Query 43896 TGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTT 43954
|||| || ||| ||||||||||| |||| ||||||| | ||||| |||| ||
Sbjct 89926757 TGGTGGAGCGATTTAGCCAAGAAGTTCAGATTA-CAGAAGCCCACTGTTTCTATGACTTC 89926815
Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014
||||||||||| ||||| | ||||| |||||||| ||||| || || || || |||||
Sbjct 89926816 CAAATTGCCATGGAAAACACACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA 89926875
Query 44015 AAAGAT 44020
||||||
Sbjct 89926876 AAAGAT 89926881
>seq5641
Length=113028656
Score = 113 bits (124), Expect = 4e-20
Identities = 92/109 (84%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 102565330 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 102565272
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| |||||||| || || || ||||| ||||||
Sbjct 102565271 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 102565223
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||||| |||| || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 102562965 GGTGAACGTGTTGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 102562906
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 102562905 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTT 102562846
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 102562845 ATTAGCAGAGATGA 102562832
>seq20726
Length=174210431
Score = 104 bits (114), Expect = 2e-17
Identities = 253/380 (67%), Gaps = 9/380 (2%)
Strand=Plus/Minus
Query 47216 GTGTTGCAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGAC 47275
||| | || || ||||||| || | |||| || ||| | ||||| | || || |||
Sbjct 30002901 GTGCTCCAGTTCCTAGGACTCTACAAGAAATTTGGAAAACTTGTATTTTTGGGTTTGGAC 30002842
Query 47276 AATGCAGGAAAAACGGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCA 47331
|||||||| ||||| | | || |||||||||||| ||| |||| | || ||
Sbjct 30002841 AATGCAGGCAAAACCACTCTTCTTCACATGCTCAAAGATGACAGATTGGGTCAA----CA 30002786
Query 47332 TAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCAC 47391
| || ||| |||||||||| || ||| | |||| ||||||||| || || |||| ||
Sbjct 30002785 TGTTCCAACACTACATCCGACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAAC 30002726
Query 47392 ATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGT 47451
|||||| | || ||||||| ||||| || | || |||||| | | | | |
Sbjct 30002725 TTTTGATCTTGGTGGACACAAGCAAGCATGTCAGGTTTGAAAAAATTGTCTCCCAGCAAT 30002666
Query 47452 TGATGCTATAGTTTATATTGTAGACTGTGCAGATTTGACTAGACTGACAGAGGCAAAAAT 47511
| ||| || |||| | | || || | ||||||| || | || | || | ||| |
Sbjct 30002665 TAATGAGATTGTTTTTCTGGTGGATTCTGCAGATCATTCTGGCCTCATGGAATCTAAAGT 30002606
Query 47512 CGAATTCGATGCGTTGTTAAACGATGAACTGTTACACGATGTTCCTATTTTAGTGTTGGG 47571
|| | |||| || | | |||||| | || | |||| || || | | |||||
Sbjct 30002605 TGAGCTTAATGCTTTAATCACTGATGAAATAATATCCAATGTGCCAATCCTTATCTTGGG 30002546
Query 47572 CAATAAAATCGACA-AACAA 47590
|| ||||| |||| |||||
Sbjct 30002545 TAACAAAATAGACAGAACAA 30002526
>seq46691
Length=94050890
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106
||||||| |||| || || ||| | || ||||| || || || |||| ||||
Sbjct 32059270 TGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACAGTGAGCTGT 32059211
Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166
| || || |||| || ||||| || |||||||| ||||| || || || ||||| || |
Sbjct 32059210 CCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTCAACATCGCCA 32059151
Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198
| || || ||||||||||| |||||||| |||
Sbjct 32059150 GCTACGCCCTGCTCACGTACATGATTGCGCAC 32059119
>seq13964
Length=198332218
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 47222 CAATTTTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCA 47281
|||||| ||||||| | | ||||| || ||| | ||||| | || ||| ||||| ||
Sbjct 124924312 CAATTTCTAGGACTCAACAAGAAATCTGGAAAACTTTTATTCTTAGGTTTAAACAATACA 124924371
Query 47282 GGAAAAACGGCATTACTC--CACATGCTCAAATACAATTGCATGAAAGAGCATAACCCTA 47339
|| ||||| |||| || |||||| ||||| | | | || |||||| || |
Sbjct 124924372 GGCAAAAC--CATTCTTCTTCACATGATCAAAGATGACAGATTGGGCCAGCATATTCCAA 124924429
Query 47340 CATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATT 47399
|| |||||| ||| || || | |||||||||||||| || || |||| || |||||
Sbjct 124924430 CACTACATCTGACATCAAAAGAGCTAACAATTGCTGGAATGACTTTTACAACTTTTGACC 124924489
Query 47400 TAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATT 47438
| || ||| ||||| || || | ||| ||||||
Sbjct 124924490 TTGGTCAGCACGAGCAAGCATGTCGAGTTTGGAAAAATT 124924528
>seq25851
Length=153482349
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 108786674 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 108786615
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| || ||||||||
Sbjct 108786614 AACGAGTTTCGGAGTATCAGCG 108786593
Score = 82.4 bits (90), Expect = 6e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757
|||||||| | |||||||| || || | ||| || ||| ||||||| ||| | |||||||
Sbjct 108810570 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 108810511
Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782
| || || |||||||||||||| ||
Sbjct 108810510 CTTCCTTCTGGACAGCAGAAGAGGT 108810486
>seq45237
Length=73212453
Score = 84.2 bits (92), Expect = 2e-11
Identities = 177/264 (67%), Gaps = 0/264 (0%)
Strand=Plus/Plus
Query 77419 AACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTT 77478
|||||| ||||| | |||||| || || ||||| |||||||| || | ||||| || ||
Sbjct 20152355 AACCCAGTTAGTTATACCATTTATCGTAAACATACTGTCTGTATACAGAACCAGTTTATT 20152414
Query 77479 GATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCTG 77538
||| || | || ||||||| | |||||| | || || || ||||| || | ||
Sbjct 20152415 GATGTTCTGAGTCTTTGCTTGTTCAATGGCTTTGCAGGCTGCATGAATTTCCGCTCTTTG 20152474
Query 77539 GTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAATA 77598
||||||||| |||| ||||| | |||| | || || ||||| ||
Sbjct 20152475 GTTTGTCTGCCGCCCAGGAAGTCTAATGCCTACATCTAAAGGATGGCCCGGCCCCCAGTA 20152534
Query 77599 TACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGTA 77658
| || || || ||||| | | | | || || |||| ||||| ||||||||
Sbjct 20152535 AAAGCGGATTCCTGCTCGTGACCTTCTACGCCCATTACTGGAGCAGCAGCCATCAGTGTA 20152594
Query 77659 GACCACCACGGCGTCACCCATGTA 77682
||| || ||| ||| ||||||||
Sbjct 20152595 GACGACGACGAAGTCTCCCATGTA 20152618
Score = 82.4 bits (90), Expect = 6e-11
Identities = 115/162 (71%), Gaps = 6/162 (4%)
Strand=Plus/Minus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 43066682 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 43066623
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | ||||| ||||||||||||||||| || | ||||| ||| |
Sbjct 43066622 AGCATGGCTGGTAGCACGGGAGTTCATGACACTGTTGTCAACCAGTTGCTGTCCAAAATT 43066563
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| ||||| | || || || || || |||| ||||| |||
Sbjct 43066562 GATGGTGTGGAGCAGCTAAACAACATCCTAGTCATTGGTATG 43066521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397157924767675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |