Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq46691 134 1e-26 seq10472 113 4e-20 seq47930 87.8 1e-12 seq17816 82.4 6e-11 >seq46691 Length=94050890 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 32059108 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 32059167 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 32059168 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 32059227 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 32059228 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 32059271 Score = 123 bits (136), Expect = 2e-23 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| ||||| || ||||||||||||||||| || || || || |||| ||| Sbjct 32063288 CATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTC 32063347 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 32063348 CCCTTCTTCTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 32063407 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| |||||||| | |||||||| || Sbjct 32063408 CCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCC 32063455 >seq10472 Length=202140232 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 39119779 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 39119720 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| | |||||| ||||||| || Sbjct 39119719 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCGACCCATAATCACCAGATT 39119660 Query 110499 CTGCTT-GCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 110556 ||| || ||||| |||||||| || | |||| | ||| | || | | || || || Sbjct 39119659 CTGTTTACCCTCT-ACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTC 39119602 Query 110557 CAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 110616 | || || |||| ||||| || ||||| || ||||||||||||| | | || Sbjct 39119601 CTGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 39119548 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 39119547 ACAGCGACGATGCAGTTTAG 39119528 >seq47930 Length=60714840 Score = 87.8 bits (96), Expect = 1e-12 Identities = 133/186 (72%), Gaps = 9/186 (5%) Strand=Plus/Plus Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 || ||||| || ||||||||||||||||| || || || || |||| ||| || |||||| Sbjct 36493633 TATTCTGC-CCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCC 36493691 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTG--GCGTCCCAGATCT 30350 | ||| ||| ||| |||||||||||| || || || | || || || | Sbjct 36493692 CAGTG-GAGAATCCCAAGTTGTCCAAAAAG-----GGCTCCACTGCCTCATCTCACATTT 36493745 Query 30351 TTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCT 30410 | || ||||| ||| || ||||| | | |||||| || ||| ||| |||||| || Sbjct 36493746 TCACTCCCTTGGAAGACAGTTCTTTAGCATGTGTGGATCCCTTGATAAACGACAGCAACT 36493805 Query 30411 CCTCCA 30416 |||||| Sbjct 36493806 CCTCCA 36493811 >seq17816 Length=183952662 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || || || | | ||||| |||||| || || Sbjct 80839825 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 80839884 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| ||||||| ||||||| ||||| || ||| Sbjct 80839885 ATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 80839932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406005684341220