Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq46691 168 6e-37 seq47930 109 5e-19 >seq46691 Length=94050890 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || ||||||||||||||||| ||||| || || |||||||| ||||| |||| ||| Sbjct 32059120 TGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCC 32059179 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 32059180 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 32059239 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || |||||||||||||| ||||| Sbjct 32059240 CAGAGGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATC 32059280 Score = 168 bits (186), Expect = 6e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||| |||||||||| ||||| || | ||| Sbjct 32059280 GATCTTCCTCTGATGGCGCTGCCTCCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAAC 32059221 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 32059220 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGTGTGCCTTTC 32059161 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| ||||||||||||||||| || || Sbjct 32059160 AACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCA 32059120 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || ||||||||||| || || || Sbjct 32063298 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCT 32063357 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||| ||| | |||||| ||||||||| || || | || |||||||| ||| Sbjct 32063358 CTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 32063417 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || ||||| || | || |||| Sbjct 32063418 ACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGG 32063451 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || ||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 32063451 CCACAAATGCTAAAGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 32063392 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||| | | | || || || ||||||||||| || | Sbjct 32063391 GAGACTTTTTGGACAGCCTGGGATTCTCCACCAGAGAAGAAGGGGACTTGGGCCCAGTTT 32063332 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 32063331 ATGGCTTCCAGTGGAGGCATTTTGGGGCAGAATA 32063298 >seq47930 Length=60714840 Score = 109 bits (120), Expect = 5e-19 Identities = 178/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 |||||||||| ||||| |||| || |||| || ||||| || || | ||| Sbjct 36491691 ATTTTGAGCTTTGGGAAAGGTCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTTGCAATG 36491750 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || ||||||| | || | |||| ||||| ||||| | | || ||||| | || Sbjct 36491751 TGACTCAGGTAAACATACACATCTCCCAAAGTATGTGCGAAGTCACCAGGCTTTAGGTCC 36491810 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACG-GCACCCC 6672 || || | ||||| || |||||||| ||||| || | |||||||| | |||||| Sbjct 36491811 GTGATGTGTGTGATCACATAAGTGAGCAGGGCGTAGCTGGTGATGTTGAAGGTGCACCC- 36491869 Query 6673 TAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTA 6732 | ||| ||||||| || | || | ||||||||||||||||| || ||| | ||| | Sbjct 36491870 -AGGCCCCTGTCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACCACGAA 36491928 Query 6733 GAATTGGCAGAGGG 6746 ||| |||||| ||| Sbjct 36491929 GAACTGGCAGGGGG 36491942 Score = 109 bits (120), Expect = 5e-19 Identities = 178/254 (70%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 34599 CCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGG 34658 ||| |||||| |||| ||| | ||| || ||||||||||||||||| | || | || | Sbjct 36491942 CCCCCTGCCAGTTCTTCGTGGTGAACGGTGAGCTGTCCTGCCAGCTGCACCAGAGGTCAG 36491883 Query 34659 GAGACATGGGGTTAGGGGTGC-CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATG 34717 |||||| ||| | |||||| | |||||||| | || ||||| |||||||| || || Sbjct 36491882 GAGACAGGGGCCT--GGGTGCACCTTCAACATCACCAGCTACGCCCTGCTCACTTATGTG 36491825 Query 34718 ATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 ||| | || || || | ||||| || | | ||||| ||||| |||| | || Sbjct 36491824 ATCACACACATCACGGACCTAAAGCCTGGTGACTTCGCACATACTTTGGGAGATGTGTAT 36491765 Query 34778 ATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTC 34837 | ||||||| ||||| | || || ||||| || |||| || |||| ||| Sbjct 36491764 GTTTACCTGAGTCACATTGCAAAACTGAAAATTCAGCTTCAGAGAGAACCAAGACCTTTC 36491705 Query 34838 CCCCAGCTCAAAAT 34851 || |||||||||| Sbjct 36491704 CCAAAGCTCAAAAT 36491691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447917602165200