Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq10472 221 1e-52
seq20754 170 2e-37
seq5641 159 3e-34
seq20727 127 2e-24
seq46691 118 9e-22
seq20726 114 1e-20
>seq10472
Length=202140232
Score = 221 bits (244), Expect = 1e-52
Identities = 381/548 (70%), Gaps = 9/548 (2%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || | ||||| || |||| |||||||| || || || || | |||||
Sbjct 39119528 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 39119587
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256
||||| || || | |||||||| | |||| || | |||||| | |||||||
Sbjct 39119588 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 39119647
Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316
|| ||||||||| | || |||||||| | ||||| ||||| || |||| | | |
Sbjct 39119648 GAGGGTAAACAGAATCTGGTGATTATGGGTCGGAAGACCTGGTTCTCCATTCC--TGAGA 39119705
Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374
|| | | ||||| || | ||||| ||| | |||||||| ||| | || || || || |
Sbjct 39119706 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 39119765
Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434
||| || ||||| ||| |||| | |||| | ||| | || | || ||| | |||
Sbjct 39119766 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAACGAC 39119825
Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494
|||||||| | | | || || | |||||||||| ||||||| || ||||| ||| |||
Sbjct 39119826 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 39119885
Query 2495 AGAGCATTACAAGATCT-TGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553
| ||| | | | || || | | | || ||| | |||||||| |||| | |||
Sbjct 39119886 A-AGCCATGAATCACCTAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTT 39119944
Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613
||| |||| || | || |||||||| || | ||||| |||| || | ||||
Sbjct 39119945 GAAAGTGACACGTTTTTTTCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATAC 39120004
Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673
|||||||||| ||||| || || || || || || |||| ||||||||||| |||||
Sbjct 39120005 CCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 39120064
Query 2674 Gaaaaaaa 2681
|| || ||
Sbjct 39120065 GAGAAGAA 39120072
Score = 187 bits (206), Expect = 2e-42
Identities = 190/248 (77%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 1276 CACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGG 1335
|||| |||| |||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 20503659 CACAGGAAGCCCTCATTGTAACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGG 20503600
Query 1336 CCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACA 1395
||| || || | |||| ||||| || | ||||| || || ||||| || || ||||
Sbjct 20503599 TCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAAGACAAGATAAACA 20503540
Query 1396 TAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATG 1455
| || |||| ||||| |||||| |||| || ||||||||||| | || |||| ||||
Sbjct 20503539 TTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGGAGGATG 20503480
Query 1456 AAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGT 1515
||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| || |
Sbjct 20503479 AAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAACAGCCT 20503420
Query 1516 GTCTAACC 1523
| || |||
Sbjct 20503419 GCCTCACC 20503412
>seq20754
Length=29380
Score = 170 bits (188), Expect = 2e-37
Identities = 375/553 (68%), Gaps = 22/553 (4%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || | ||||| || | || |||||||||| || || | | |||||
Sbjct 14761 CTAAACTGCATCGTCGCTGTGTCCCAGAACGTGGGCATTGGCAAGAACAGGGACCTGCCC 14820
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCT-TCCACT-G 2257
||||| || || | |||||| ||| |||| || | || |||| || | || | |
Sbjct 14821 TGGCCGCCGCTCAGGAATGAACTTAGGTATTTCCAGAGAACGACACAAACTCTTCAGTAG 14880
Query 2258 ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAA 2317
| ||||||||| | || |||||| | || | || ||||| | | |||| | ||
Sbjct 14881 AAGGTAAACAGAATCTGGTGATTATGTGTAGGGAAACCTGGTTCTGA-TTCCTGAGAGAA 14939
Query 2318 GCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCAC 2377
| | ||||| || | ||||| ||| | || |||| ||| | || || || || ||||
Sbjct 14940 TC-GACCTTTAAAGGATAGAATTAATTTAGTAATCAGCAGAGAACTCAAGGAACCTCCAC 14998
Query 2378 GTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAA-TTATAATAGGACCA 2436
|| ||||| ||| |||| | |||| | ||| | | ||| ||| ||| | ||||
Sbjct 14999 AAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGA-GATCTTTAAACTTACTGAACAACCA 15057
Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496
|||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||||
Sbjct 15058 GAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGGAA 15117
Query 2497 AGCATTA------CAAG--ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAA 2548
||| | |||| ||||| |||| | ||| | ||| |||| |||||
Sbjct 15118 GCCATGAATCACCCAAGCCATCTT--AAAC------TATTTGTGACAGGGATCATGCAAG 15169
Query 2549 AATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTG 2608
| |||||| |||| |||| || ||||||| | || | ||||| |||| || | |
Sbjct 15170 ACTTTGAAAGTGACACATTTTTTCCAGAAACTGATTTGGAGAAATATAAACTTCTGCCAG 15229
Query 2609 AATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGA 2668
||| ||| || |||| ||| | || || || ||||| || |||| |||||||||||
Sbjct 15230 AATATCCGGGGGTTCTCTCAGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAG 15289
Query 2669 TATATGaaaaaaa 2681
||||||| || ||
Sbjct 15290 TATATGAGAAGAA 15302
>seq5641
Length=113028656
Score = 159 bits (176), Expect = 3e-34
Identities = 351/519 (68%), Gaps = 9/519 (2%)
Strand=Plus/Minus
Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226
|| |||||||| || || | || | ||||| ||||| || || | | |||||| |
Sbjct 27360588 AACATGGGCATCGGCAAGAGTGGGGACCTGCCCTGGCCACCGCTCAGGAGTGAATTCAGG 27360529
Query 2227 CATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATG 2283
|||| || | |||||| | ||||| | | | || |||||| | || ||| |
Sbjct 27360528 TATTTCCAGAGAATGACCACAACTTCCTCAGTAGAAGGTAAGCAGAATTTGGTGATTTTA 27360469
Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACAACAGAATAAAT 2343
|| || |||| ||||| || |||| || | | ||||| || || ||||| |||
Sbjct 27360468 GGTAGGAAGATCTGGTTCTCCATTCCTGAGAATAATCGACCTTTAAAGAATAGAATTAAT 27360409
Query 2344 CTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGT 2403
|||||||| ||| |||| || || || |||| || ||||| ||| |||| | ||||
Sbjct 27360408 TCAGTTCTCAGGAGAGACCTCAA-GAACCTCCACAAGGAGCTCAATTTCTTGCGAGAAGT 27360350
Query 2404 ATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATT 2463
| ||| | || || ||| | ||||| || ||||||| | | | || || | ||||
Sbjct 27360349 CTGGATGATGC-CTTAAAACT-TAATA--ACTAGAATTAGCAAATAAAGTAGACATGATT 27360294
Query 2464 TGGATAATTGGTGGAAGATCTGTCT-ATGAGGAGAGCATTACAAGATCTTGCAAACAGAT 2522
|||||| ||||||| || ||| | | ||||||| ||| | || |||| | |
Sbjct 27360293 TGGATAGTTGGTGGTAGTTCTATTTTATGAGGAATCCATGAATCACTCAAGCAATCTTAA 27360234
Query 2523 GCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAA 2582
|| ||| |||||||| |||| | |||||| |||| || | || ||||||||| |
Sbjct 27360233 ACTATTTGCGACAAGGATCATGCAGGACTTTGAAAGTGACACGTTTTTTCCAGAAATTGA 27360174
Query 2583 TCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGA 2642
| | ||||| |||| || | |||| ||||||||| ||||| | || || ||
Sbjct 27360173 TTTGGAGAAATATAAACTTCTGCCAGAATACCCAGGTGTTTTCTCTGATGCCCAGGAGGA 27360114
Query 2643 AAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681
|| || |||| ||||||||||| || |||| || ||
Sbjct 27360113 GAAAGGCATTAAGTACAAATTTGAAGTACATGAGAAGAA 27360075
>seq20727
Length=1646321
Score = 127 bits (140), Expect = 2e-24
Identities = 309/459 (67%), Gaps = 23/459 (5%)
Strand=Plus/Plus
Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199
|||||||| || | ||||| || | || ||||||||||| || || | | |||||
Sbjct 769882 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACAGGGACCTGCCC 769941
Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG--ACATCTTCTTCCACTG 2257
||||| || || | |||||||||| |||| || | || | ||| ||||| |
Sbjct 769942 TGGCCGCCGCTCAGGAATGAATTTAGGTATTTCCAGAGAACGACACAAACTCTTCAGTAG 770001
Query 2258 ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAA 2317
| ||| ||||| | || ||| || | || ||||| ||||| | | |||| | ||
Sbjct 770002 AAGGTAAATAGAATCTGGTGATTTTGTGTAGGAAGACCTGGTTCTGA-TTCCTGAGAGAA 770060
Query 2318 GCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCAC 2377
| | ||||| || | ||||| ||| | ||| |||| ||| | || || ||||| ||||
Sbjct 770061 TC-GACCTTTAAAGGATAGAATTAATTTAGTTTTCAGCAGAGAACTCAAGGAGCCTCCAC 770119
Query 2378 GTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAA-TTATAATAGGACCA 2436
|| | ||| ||| ||| |||| | ||| | ||| ||| ||| | ||||
Sbjct 770120 AAGGAGTTCATTTTCCTGCCGGAAGTCTGGATGA-TATCTTAAAACTTACTGAACAACCA 770178
Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496
|||||| | | || || || | |||||||||| ||||||| || ||||| ||| ||||
Sbjct 770179 GAATTAGCAAATAGAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGGAA 770238
Query 2497 AGCATTA-----CAAG---ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAA 2548
||| | | || ||||| ||| |||||| | |||||||| ||||
Sbjct 770239 GCCATGAATCACCCAGGGCATCTT--AAA------CTGTTTGTGACAAGGATCATGCAGG 770290
Query 2549 AATTTGAATGTGATAC-ATACTTCCCAGAAATTAATCTT 2586
| |||||| |||| || | |||||||||||| || ||
Sbjct 770291 ACTTTGAAAGTGACACGTTTTTTCCCAGAAATTGATTTT 770329
>seq46691
Length=94050890
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | || ||||| ||||||||| | ||||| || |||||||||
Sbjct 76127243 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 76127184
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || ||||||
Sbjct 76127183 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 76127124
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 76127123 ATCGCCCTGTGGATGACTGA 76127104
Score = 105 bits (116), Expect = 6e-18
Identities = 120/161 (75%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| || || | ||| ||||||||||| || | || ||||||||| | || |||||
Sbjct 32059108 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 32059167
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| |
Sbjct 32059168 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 32059227
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||| | | | || ||||||||||| ||||
Sbjct 32059228 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 32059268
>seq20726
Length=174210431
Score = 114 bits (126), Expect = 1e-20
Identities = 176/250 (70%), Gaps = 1/250 (0%)
Strand=Plus/Minus
Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492
|||||||||| | | | || || | |||||||||| ||||||| || ||||| ||| |
Sbjct 56876537 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAA 56876478
Query 2493 GGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552
||| ||| | | || | | | || ||| | |||||||| |||| | ||
Sbjct 56876477 GGAATCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTT 56876418
Query 2553 TGAATGTGATACATACTTC-CCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611
|||| |||| || || || ||||||||| || | ||||| |||| || | ||||
Sbjct 56876417 TGAAAGTGACACGTATTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAAT 56876358
Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671
|||||||||| ||||| || || || || || || |||| ||||||||||| |||
Sbjct 56876357 ACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTAT 56876298
Query 2672 ATGaaaaaaa 2681
|||| |||||
Sbjct 56876297 ATGAGAAAAA 56876288
Score = 105 bits (116), Expect = 6e-18
Identities = 177/254 (70%), Gaps = 9/254 (4%)
Strand=Plus/Minus
Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492
|||||||||| | | | || || | |||||||||| ||||||| || ||||| ||| |
Sbjct 56870657 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAA 56870598
Query 2493 GGAGAGCATTACAAGATCTTGCAAACAG----ATGCTGTTTTTAACAAGGATTCTGCAAA 2548
||| ||| | ||| || | | | || ||| | |||||||| ||||
Sbjct 56870597 GGAATCCATGA----ATCACCCAGGCCGTCTTAAACTATTTGTGACAAGGATCATGCAGG 56870542
Query 2549 AATTTGAATGTGATACATACTTC-CCAGAAATTAATCTTACCAAATACAAACAACTTACT 2607
| |||||| |||| || | || ||||||||| || | ||||| |||| || |
Sbjct 56870541 ACTTTGAAAGTGACACGTGTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCA 56870482
Query 2608 GAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAG 2667
|||| |||||||||| ||||| || || || || || || |||| |||||||||||
Sbjct 56870481 GAATACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAA 56870422
Query 2668 ATATATGaaaaaaa 2681
||||||| |||||
Sbjct 56870421 GTATATGAGAAAAA 56870408
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414165959885740
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |