Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq10472 221 1e-52 seq20754 170 2e-37 seq5641 159 3e-34 seq20727 127 2e-24 seq46691 118 9e-22 seq20726 114 1e-20 >seq10472 Length=202140232 Score = 221 bits (244), Expect = 1e-52 Identities = 381/548 (70%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || |||| |||||||| || || || || | ||||| Sbjct 39119528 CTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGCCC 39119587 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACT 2256 ||||| || || | |||||||| | |||| || | |||||| | ||||||| Sbjct 39119588 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTA 39119647 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| | ||||| ||||| || |||| | | | Sbjct 39119648 GAGGGTAAACAGAATCTGGTGATTATGGGTCGGAAGACCTGGTTCTCCATTCC--TGAGA 39119705 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| ||| | || || || || | Sbjct 39119706 AGAATCGACCTTTAAAGGATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTC 39119765 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | ||| Sbjct 39119766 CACAAGGAGCTCATTTTCTTGCCAGAAGTTTGGATGATGCCTTAAAACTTACTGAACGAC 39119825 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | |||||||||| ||||||| || ||||| ||| ||| Sbjct 39119826 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGG 39119885 Query 2495 AGAGCATTACAAGATCT-TGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | || || | | | || ||| | |||||||| |||| | ||| Sbjct 39119886 A-AGCCATGAATCACCTAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTTT 39119944 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || |||||||| || | ||||| |||| || | |||| Sbjct 39119945 GAAAGTGACACGTTTTTTTCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATAC 39120004 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||| ||||| || || || || || || |||| ||||||||||| ||||| Sbjct 39120005 CCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 39120064 Query 2674 Gaaaaaaa 2681 || || || Sbjct 39120065 GAGAAGAA 39120072 Score = 187 bits (206), Expect = 2e-42 Identities = 190/248 (77%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 1276 CACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGG 1335 |||| |||| |||||||||||||||| ||| ||||| ||||||||||||||||| Sbjct 20503659 CACAGGAAGCCCTCATTGTAACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGG 20503600 Query 1336 CCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACA 1395 ||| || || | |||| ||||| || | ||||| || || ||||| || || |||| Sbjct 20503599 TCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAAGACAAGATAAACA 20503540 Query 1396 TAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATG 1455 | || |||| ||||| |||||| |||| || ||||||||||| | || |||| |||| Sbjct 20503539 TTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACCCTGGAGGATG 20503480 Query 1456 AAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGT 1515 ||||||| |||| |||| | || || || ||||| | ||||||||| ||||||| || | Sbjct 20503479 AAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTTTGGGAAGATCTCAGGAACAGCCT 20503420 Query 1516 GTCTAACC 1523 | || ||| Sbjct 20503419 GCCTCACC 20503412 >seq20754 Length=29380 Score = 170 bits (188), Expect = 2e-37 Identities = 375/553 (68%), Gaps = 22/553 (4%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||||| || || | | ||||| Sbjct 14761 CTAAACTGCATCGTCGCTGTGTCCCAGAACGTGGGCATTGGCAAGAACAGGGACCTGCCC 14820 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCT-TCCACT-G 2257 ||||| || || | |||||| ||| |||| || | || |||| || | || | | Sbjct 14821 TGGCCGCCGCTCAGGAATGAACTTAGGTATTTCCAGAGAACGACACAAACTCTTCAGTAG 14880 Query 2258 ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAA 2317 | ||||||||| | || |||||| | || | || ||||| | | |||| | || Sbjct 14881 AAGGTAAACAGAATCTGGTGATTATGTGTAGGGAAACCTGGTTCTGA-TTCCTGAGAGAA 14939 Query 2318 GCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCAC 2377 | | ||||| || | ||||| ||| | || |||| ||| | || || || || |||| Sbjct 14940 TC-GACCTTTAAAGGATAGAATTAATTTAGTAATCAGCAGAGAACTCAAGGAACCTCCAC 14998 Query 2378 GTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAA-TTATAATAGGACCA 2436 || ||||| ||| |||| | |||| | ||| | | ||| ||| ||| | |||| Sbjct 14999 AAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGA-GATCTTTAAACTTACTGAACAACCA 15057 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 |||||| | | | || || | |||||||||| ||||||| || ||||| ||| |||| Sbjct 15058 GAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGGAA 15117 Query 2497 AGCATTA------CAAG--ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAA 2548 ||| | |||| ||||| |||| | ||| | ||| |||| ||||| Sbjct 15118 GCCATGAATCACCCAAGCCATCTT--AAAC------TATTTGTGACAGGGATCATGCAAG 15169 Query 2549 AATTTGAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTG 2608 | |||||| |||| |||| || ||||||| | || | ||||| |||| || | | Sbjct 15170 ACTTTGAAAGTGACACATTTTTTCCAGAAACTGATTTGGAGAAATATAAACTTCTGCCAG 15229 Query 2609 AATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGA 2668 ||| ||| || |||| ||| | || || || ||||| || |||| ||||||||||| Sbjct 15230 AATATCCGGGGGTTCTCTCAGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAG 15289 Query 2669 TATATGaaaaaaa 2681 ||||||| || || Sbjct 15290 TATATGAGAAGAA 15302 >seq5641 Length=113028656 Score = 159 bits (176), Expect = 3e-34 Identities = 351/519 (68%), Gaps = 9/519 (2%) Strand=Plus/Minus Query 2167 AATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAAAATGAATTTAAA 2226 || |||||||| || || | || | ||||| ||||| || || | | |||||| | Sbjct 27360588 AACATGGGCATCGGCAAGAGTGGGGACCTGCCCTGGCCACCGCTCAGGAGTGAATTCAGG 27360529 Query 2227 CATTTTCAAAAAATGACATCTTCTTCCACTGACTTA---AAACAGAATGTTGTAATTATG 2283 |||| || | |||||| | ||||| | | | || |||||| | || ||| | Sbjct 27360528 TATTTCCAGAGAATGACCACAACTTCCTCAGTAGAAGGTAAGCAGAATTTGGTGATTTTA 27360469 Query 2284 GGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCAGGCCTTTGAACAACAGAATAAAT 2343 || || |||| ||||| || |||| || | | ||||| || || ||||| ||| Sbjct 27360468 GGTAGGAAGATCTGGTTCTCCATTCCTGAGAATAATCGACCTTTAAAGAATAGAATTAAT 27360409 Query 2344 CTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGT 2403 |||||||| ||| |||| || || || |||| || ||||| ||| |||| | |||| Sbjct 27360408 TCAGTTCTCAGGAGAGACCTCAA-GAACCTCCACAAGGAGCTCAATTTCTTGCGAGAAGT 27360350 Query 2404 ATAGATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATT 2463 | ||| | || || ||| | ||||| || ||||||| | | | || || | |||| Sbjct 27360349 CTGGATGATGC-CTTAAAACT-TAATA--ACTAGAATTAGCAAATAAAGTAGACATGATT 27360294 Query 2464 TGGATAATTGGTGGAAGATCTGTCT-ATGAGGAGAGCATTACAAGATCTTGCAAACAGAT 2522 |||||| ||||||| || ||| | | ||||||| ||| | || |||| | | Sbjct 27360293 TGGATAGTTGGTGGTAGTTCTATTTTATGAGGAATCCATGAATCACTCAAGCAATCTTAA 27360234 Query 2523 GCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAA 2582 || ||| |||||||| |||| | |||||| |||| || | || ||||||||| | Sbjct 27360233 ACTATTTGCGACAAGGATCATGCAGGACTTTGAAAGTGACACGTTTTTTCCAGAAATTGA 27360174 Query 2583 TCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGA 2642 | | ||||| |||| || | |||| ||||||||| ||||| | || || || Sbjct 27360173 TTTGGAGAAATATAAACTTCTGCCAGAATACCCAGGTGTTTTCTCTGATGCCCAGGAGGA 27360114 Query 2643 AAATGGAATTAGATACAAATTTGAGATATATGaaaaaaa 2681 || || |||| ||||||||||| || |||| || || Sbjct 27360113 GAAAGGCATTAAGTACAAATTTGAAGTACATGAGAAGAA 27360075 >seq20727 Length=1646321 Score = 127 bits (140), Expect = 2e-24 Identities = 309/459 (67%), Gaps = 23/459 (5%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || ||||||||||| || || | | ||||| Sbjct 769882 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATTGGCAAGAACAGGGACCTGCCC 769941 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG--ACATCTTCTTCCACTG 2257 ||||| || || | |||||||||| |||| || | || | ||| ||||| | Sbjct 769942 TGGCCGCCGCTCAGGAATGAATTTAGGTATTTCCAGAGAACGACACAAACTCTTCAGTAG 770001 Query 2258 ACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAA 2317 | ||| ||||| | || ||| || | || ||||| ||||| | | |||| | || Sbjct 770002 AAGGTAAATAGAATCTGGTGATTTTGTGTAGGAAGACCTGGTTCTGA-TTCCTGAGAGAA 770060 Query 2318 GCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCAC 2377 | | ||||| || | ||||| ||| | ||| |||| ||| | || || ||||| |||| Sbjct 770061 TC-GACCTTTAAAGGATAGAATTAATTTAGTTTTCAGCAGAGAACTCAAGGAGCCTCCAC 770119 Query 2378 GTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAA-TTATAATAGGACCA 2436 || | ||| ||| ||| |||| | ||| | ||| ||| ||| | |||| Sbjct 770120 AAGGAGTTCATTTTCCTGCCGGAAGTCTGGATGA-TATCTTAAAACTTACTGAACAACCA 770178 Query 2437 GAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAG 2496 |||||| | | || || || | |||||||||| ||||||| || ||||| ||| |||| Sbjct 770179 GAATTAGCAAATAGAGTAGACATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAAGGAA 770238 Query 2497 AGCATTA-----CAAG---ATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAA 2548 ||| | | || ||||| ||| |||||| | |||||||| |||| Sbjct 770239 GCCATGAATCACCCAGGGCATCTT--AAA------CTGTTTGTGACAAGGATCATGCAGG 770290 Query 2549 AATTTGAATGTGATAC-ATACTTCCCAGAAATTAATCTT 2586 | |||||| |||| || | |||||||||||| || || Sbjct 770291 ACTTTGAAAGTGACACGTTTTTTCCCAGAAATTGATTTT 770329 >seq46691 Length=94050890 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 76127243 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 76127184 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 76127183 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 76127124 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 76127123 ATCGCCCTGTGGATGACTGA 76127104 Score = 105 bits (116), Expect = 6e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| ||||||||||| || | || ||||||||| | || ||||| Sbjct 32059108 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 32059167 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| ||||| || ||||| | ||| | Sbjct 32059168 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 32059227 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 32059228 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 32059268 >seq20726 Length=174210431 Score = 114 bits (126), Expect = 1e-20 Identities = 176/250 (70%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | || || | |||||||||| ||||||| || ||||| ||| | Sbjct 56876537 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAA 56876478 Query 2493 GGAGAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATT 2552 ||| ||| | | || | | | || ||| | |||||||| |||| | || Sbjct 56876477 GGAATCCATGAATCACCCAGGCCATCTTAAACTATTTGTGACAAGGATCATGCAGGACTT 56876418 Query 2553 TGAATGTGATACATACTTC-CCAGAAATTAATCTTACCAAATACAAACAACTTACTGAAT 2611 |||| |||| || || || ||||||||| || | ||||| |||| || | |||| Sbjct 56876417 TGAAAGTGACACGTATTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAAT 56876358 Query 2612 TTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATAT 2671 |||||||||| ||||| || || || || || || |||| ||||||||||| ||| Sbjct 56876357 ACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTAT 56876298 Query 2672 ATGaaaaaaa 2681 |||| ||||| Sbjct 56876297 ATGAGAAAAA 56876288 Score = 105 bits (116), Expect = 6e-18 Identities = 177/254 (70%), Gaps = 9/254 (4%) Strand=Plus/Minus Query 2433 ACCAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGA 2492 |||||||||| | | | || || | |||||||||| ||||||| || ||||| ||| | Sbjct 56870657 ACCAGAATTAGCAAATAAAGTAGAGATGATTTGGATAGTTGGTGGCAGTTCTGTTTATAA 56870598 Query 2493 GGAGAGCATTACAAGATCTTGCAAACAG----ATGCTGTTTTTAACAAGGATTCTGCAAA 2548 ||| ||| | ||| || | | | || ||| | |||||||| |||| Sbjct 56870597 GGAATCCATGA----ATCACCCAGGCCGTCTTAAACTATTTGTGACAAGGATCATGCAGG 56870542 Query 2549 AATTTGAATGTGATACATACTTC-CCAGAAATTAATCTTACCAAATACAAACAACTTACT 2607 | |||||| |||| || | || ||||||||| || | ||||| |||| || | Sbjct 56870541 ACTTTGAAAGTGACACGTGTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCA 56870482 Query 2608 GAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAG 2667 |||| |||||||||| ||||| || || || || || || |||| ||||||||||| Sbjct 56870481 GAATACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAA 56870422 Query 2668 ATATATGaaaaaaa 2681 ||||||| ||||| Sbjct 56870421 GTATATGAGAAAAA 56870408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414165959885740