Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq28484 89.7 4e-13 seq25851 89.7 4e-13 seq10472 82.4 7e-11 >seq1 Length=229942017 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| ||||||| || || ||| |||||| || || || || || | || || | | Sbjct 221679904 GCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCC 221679963 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||||||||| |||||||| |||||||||||||| | || | | ||| || Sbjct 221679964 ATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTT 221680023 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||||| ||||| || | | || || || | ||| || || | ||||| Sbjct 221680024 GTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 221680083 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 |||| ||||| || || || |||||||| ||||| ||| || Sbjct 221680084 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 221680126 >seq28484 Length=135191526 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | ||||| || || ||| || ||| || || || || || | Sbjct 39947287 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGGCTGTTTCTGGATGTTGTAGTCTGA 39947346 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || | | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 39947347 GAGAGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 39947406 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| |||| || | | || || || | ||| | Sbjct 39947407 G-ATACCCTCCTTGTCTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGA 39947465 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || ||||| || || || |||||||| ||||||| Sbjct 39947466 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 39947516 >seq25851 Length=153482349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/145 (75%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | ||| | ||||| || || ||| |||||| || || || || || | Sbjct 130907300 GCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 130907241 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || |||||||||||||||| ||| |||||||||||||| ||||| Sbjct 130907240 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 130907181 Query 39176 GCACGCTCTCTTTGTCCATGATTTT 39200 | | || ||| |||||| ||| ||| Sbjct 130907180 G-ATGCCCTCCTTGTCC-TGAATTT 130907158 >seq10472 Length=202140232 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| |||||| | || || || || | || ||||| | Sbjct 119681389 GCGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTCGACC 119681448 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 || || ||||||||||| |||| ||| ||| |||||||||| |||||| | | ||| | Sbjct 119681449 ATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG-ATAC-CTCCT 119681506 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||||| ||||| || | | || || || | ||| || || | || | Sbjct 119681507 TGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGAGTTA 119681566 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | | || ||||| || || || |||||||| ||| ||| Sbjct 119681567 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCGTCT 119681605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429223458921455