Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq1 105 6e-18
seq28484 89.7 4e-13
seq25851 89.7 4e-13
seq10472 82.4 7e-11
>seq1
Length=229942017
Score = 105 bits (116), Expect = 6e-18
Identities = 157/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| ||||||| || || ||| |||||| || || || || || | || || | |
Sbjct 221679904 GCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGGCC 221679963
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
|| || ||||||||||| |||||||| |||||||||||||| | || | | ||| ||
Sbjct 221679964 ATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCCTT 221680023
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
||| ||||| ||||| || | | || || || | ||| || || | |||||
Sbjct 221680024 GTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 221680083
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291
|||| ||||| || || || |||||||| ||||| ||| ||
Sbjct 221680084 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 221680126
>seq28484
Length=135191526
Score = 89.7 bits (98), Expect = 4e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | || | ||||| || || ||| || ||| || || || || || |
Sbjct 39947287 GCCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGGCTGTTTCTGGATGTTGTAGTCTGA 39947346
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || | | || || ||||||||||| |||||||| |||||||||||||| |||||
Sbjct 39947347 GAGAGTGCAGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 39947406
Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| | | ||| ||||| ||||| |||| || | | || || || | ||| |
Sbjct 39947407 G-ATACCCTCCTTGTCTTGAATTTTGGCATTGACATTCTCAATGGTGTCACTGGGCTCGA 39947465
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| || | ||||| | || ||||| || || || |||||||| |||||||
Sbjct 39947466 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCATCT 39947516
>seq25851
Length=153482349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 109/145 (75%), Gaps = 3/145 (2%)
Strand=Plus/Minus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
||| |||| | ||| | ||||| || || ||| |||||| || || || || || |
Sbjct 130907300 GCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 130907241
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175
|| || || | || || |||||||||||||||| ||| |||||||||||||| |||||
Sbjct 130907240 GAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCAAGTATCAGACGCTGCTGGTCAGGTGG 130907181
Query 39176 GCACGCTCTCTTTGTCCATGATTTT 39200
| | || ||| |||||| ||| |||
Sbjct 130907180 G-ATGCCCTCCTTGTCC-TGAATTT 130907158
>seq10472
Length=202140232
Score = 82.4 bits (90), Expect = 7e-11
Identities = 152/219 (69%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || ||| |||||| | || || || || | || ||||| |
Sbjct 119681389 GCGCAGCACCAGGTGCAGGGTGGACTCTTTCCGGATGTTGTAGTCTGAGAGAGTTCGACC 119681448
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187
|| || ||||||||||| |||| ||| ||| |||||||||| |||||| | | ||| |
Sbjct 119681449 ATCCTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG-ATAC-CTCCT 119681506
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247
|||| ||||| ||||| || | | || || || | ||| || || | || |
Sbjct 119681507 TGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTTGGCTCGACCTCAAGAGTTA 119681566
Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
| | || ||||| || || || |||||||| ||| |||
Sbjct 119681567 TGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCGTCT 119681605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429223458921455
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |