Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq46691 145 6e-30
seq47930 120 2e-22
seq10472 109 4e-19
seq17816 82.4 6e-11
>seq46691
Length=94050890
Score = 145 bits (160), Expect = 6e-30
Identities = 131/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || |||
Sbjct 32059108 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 32059167
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || || |||||||| |||||||| || ||||| | || |
Sbjct 32059168 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 32059227
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | ||||||||| ||||| || ||||| |||
Sbjct 32059228 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 32059272
Score = 105 bits (116), Expect = 5e-18
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || |||| ||| || ||||| ||| |||
Sbjct 32063310 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGTGGAGAAT 32063369
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||||||||||| ||| || ||||| |||||||| || || |||||
Sbjct 32063370 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 32063429
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| |||||||| | |||||||| ||
Sbjct 32063430 GACAGCTCTTTAGCATTTGTGGATCC 32063455
>seq47930
Length=60714840
Score = 120 bits (132), Expect = 2e-22
Identities = 173/239 (72%), Gaps = 4/239 (2%)
Strand=Plus/Plus
Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669
||||||||| ||| || || |||| |||||||| |||| | | | ||| ||||
Sbjct 36491702 TGGGAAAGG-TCTTGGTTCTCTCTGAAGCTGAATTTTCAGTTTTGCAATGTGACTCAGGT 36491760
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| || | ||||||||| || || | || || || || | ||| | |||| ||| |
Sbjct 36491761 AAACATACACATCTCCCAAAGTATGTGCGAAGTCACCAGGCTTTAGGTCCGTGATGTGTG 36491820
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGG-GCACCCCGAGCCCCATG 29788
|||| || ||||| || | |||||||| |||||| |||| |||||| | ||||| ||
Sbjct 36491821 TGATCACATAAGTGAGCAGGGCGTAGCTGGTGATGTTGAAGGTGCACCCAG-GCCCC-TG 36491878
Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACA 29847
|| ||||||||||||| |||||||| || ||||| |||| |||| | ||||| ||
Sbjct 36491879 TCTCCTGACCTCTGGTGCAGCTGGCAGGACAGCTCACCGTTCACCACGAAGAACTGGCA 36491937
>seq10472
Length=202140232
Score = 109 bits (120), Expect = 4e-19
Identities = 183/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| |||| || | || || |
Sbjct 39119779 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 39119720
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||| ||||| | |||||| ||||||| ||
Sbjct 39119719 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCGACCCATAATCACCAGATT 39119660
Query 114382 CTGCTTA-CCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439
||| ||| ||||| | ||||| || | |||| | ||| | || | | || || ||
Sbjct 39119659 CTGTTTACCCTCT-ACTGAAGAAGTTGTGGTC-ATTCTCTGGAAATACCTGAATTCATT- 39119603
Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACAC 114499
|| | ||| |||| ||||| || ||||| || ||||||||||||| | | ||
Sbjct 39119602 -----CCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTTTGGGAC 39119548
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 39119547 ACAGCGACGATGCAGTTTAG 39119528
>seq17816
Length=183952662
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || |||||||| |||| || | || || | | ||||| |||||| || ||
Sbjct 80839825 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 80839884
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| ||||| ||||||| ||||||| ||||| ||||||
Sbjct 80839885 ATGGAGAACCAGGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 80839932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405858594735010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |