Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq51122 304 1e-77 seq1 140 3e-28 seq10472 111 1e-19 seq47930 105 6e-18 seq5641 98.7 8e-16 seq25851 89.7 4e-13 seq20726 82.4 7e-11 >seq51122 Length=156195299 Score = 304 bits (336), Expect = 1e-77 Identities = 527/758 (70%), Gaps = 10/758 (1%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || || || |||| || |||| || || ||||| | | Sbjct 44959305 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCTT 44959364 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || || |||||||| || || | | ||||| || Sbjct 44959365 CACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTC 44959424 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | | | | | || | |||| ||| | ||| | || | |||| || || |||||||| Sbjct 44959425 TCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44959484 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || |||||||| | || ||||| Sbjct 44959485 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44959544 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| || || |||||||| | ||||||||| Sbjct 44959545 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTAC 44959604 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737 || || || ||||| | || || | | ||| ||||||| |||||| | Sbjct 44959605 TGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCA 44959663 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA--TAATTT 4795 | ||||| | || || ||||| || || || || || | || || || || ||| || Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723 Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | ||| | |||| |||| || |||||||| || || || |||||||||||||||| Sbjct 44959724 CCCTTTCTT---TGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44959780 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| ||||| || ||||| || || || || || || | |||||||| | |||||| Sbjct 44959781 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44959840 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | || ||||| || || || ||||| |||||||| || ||||| |||||||| || Sbjct 44959841 TTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44959900 Query 4975 CCAAAACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 ||| |||||| |||||||| | || | || || ||||| || || |||||| | | Sbjct 44959901 CCAGAACATGGGATATAAAAT-CTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATG 44959959 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 || || | | || || ||||| ||||| || || || ||||| || || ||||| Sbjct 44959960 TCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44960019 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 ||| |||||| | |||| || || | |||||||| Sbjct 44960020 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057 Score = 127 bits (140), Expect = 2e-24 Identities = 332/509 (65%), Gaps = 37/509 (7%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || || ||||| ||||| ||||| || ||||||||||| Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 | | ||| || |||||| ||| | | || || | | |||||| | Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 144142769 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| || |||| || || ||||| || || || ||||| | || || || Sbjct 144142768 ATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 144142710 Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | ||| |||| || || |||| ||||| ||||| || || || ||| Sbjct 144142709 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 144142656 Query 4844 CATTTC--------------------------AGAATGTATATTTTCTATAGCAATCTGA 4877 ||||| ||||||||| |||||||||||||| || Sbjct 144142655 TATTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGG 144142596 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937 ||||| || ||||| | |||||| | |||||||| | | |||| ||| || ||| Sbjct 144142595 AATCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAG 144142536 Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| | || ||| || |||| |||||||| || |||| || ||| |||||||| | Sbjct 144142535 TTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGT 144142476 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 ||| |||||||| || || |||||| Sbjct 144142475 CTTTCCTCAGGCTTCAGGGCTTCCCAGTG 144142447 >seq1 Length=229942017 Score = 140 bits (154), Expect = 3e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| || |||||||| || || || |||||||||||||||||| | ||||| || ||| Sbjct 89926880 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 89926821 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || | || || || |||||||| | |||||||| | | ||||| || Sbjct 89926820 ATTTGGAAGTCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 89926761 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| |||||||| || ||||| |||||||| || |||| |||| | |||||| Sbjct 89926760 ACCAAGTTTTCATTTACTATCCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 89926701 Query 4992 AA 4993 || Sbjct 89926700 AA 89926699 >seq10472 Length=202140232 Score = 111 bits (122), Expect = 1e-19 Identities = 175/248 (71%), Gaps = 6/248 (2%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| ||||| |||| || ||||| || || | ||||| ||||| ||| || || |||| Sbjct 7275711 AGCTCTAGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTGTTACAGAAGAGTAGC 7275652 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | | ||| ||||| | ||||||||||| || || || || ||| | |||||| Sbjct 7275651 TCCATGGTTTGGTTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTATCATAGATGA 7275592 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || ||||||| ||||| ||| ||||||||||||| |||||| | || || Sbjct 7275591 AGATTACTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAG 7275533 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | ||||| | ||| | | || || || ||||| ||| ||| | || |||| Sbjct 7275532 TCAGAAAAA--GTGATTGTATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAAT 7275475 Query 32002 AGAAGTAG 32009 ||||| || Sbjct 7275474 AGAAGAAG 7275467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350 |||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || | Sbjct 176063933 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 176063874 Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410 | ||||| || || |||||||||||||||||| || || ||| |||| || Sbjct 176063873 CCTG---ATCCTATATTGCTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 176063817 Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446 || || || || || || | |||||||| |||||| Sbjct 176063816 GAATATGGACTCTATTCCATCTATCAAGGGGGAATA 176063781 >seq47930 Length=60714840 Score = 105 bits (116), Expect = 6e-18 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| | | | ||||| ||||| || ||| || ||||||| || Sbjct 53956651 GTGAAAACGGACATTCAGACAGCGCTTCCTTCTGGGTGTTATGGA-GAGTAGCTCCAAGG 53956709 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||||||||| | || || | || ||||| | |||| ||| ||| Sbjct 53956710 TCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGTAGCTGGTGTCACAGATGAAGATTAT 53956769 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948 |||||||| ||||| |||| | ||||||||||| |||||| | | ||| |||| Sbjct 53956770 AGAGGAAATGTTGGTGTTGTACTCTTTAATTTTGGCAAAGAAAAGT-TTGAAGT-CAAAA 53956827 Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || || ||| | | || || || ||||| ||| Sbjct 53956828 AAAGGTGATCGAATCGCACAGCTCATTTGTGAA 53956860 >seq5641 Length=113028656 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| |||||||| || | || ||||| | |||| || || Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951 Query 4692 AC 4693 || Sbjct 102562952 AC 102562953 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 102565221 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 102565280 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 102565281 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 102565338 >seq25851 Length=153482349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 108804268 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 108804324 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 108804325 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 108804384 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 108804385 ATAAGTCGAC 108804394 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 108786596 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 108786655 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 108786656 ATAAAATCAAAAGGATT 108786672 >seq20726 Length=174210431 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| ||||| | ||||| ||||| || || || || ||||| |||||| | | ||| Sbjct 86331946 TCTGGCTTGGCTGCAAAACATTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTAT 86331887 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 |||||||| ||||| |||| ||||||||||||| Sbjct 86331886 AGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 86331852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426729330816155