Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 304 1e-77
seq1 140 3e-28
seq10472 111 1e-19
seq47930 105 6e-18
seq5641 98.7 8e-16
seq25851 89.7 4e-13
seq20726 82.4 7e-11
>seq51122
Length=156195299
Score = 304 bits (336), Expect = 1e-77
Identities = 527/758 (70%), Gaps = 10/758 (1%)
Strand=Plus/Plus
Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438
|| ||| || ||||| || || || || |||| || |||| || || ||||| | |
Sbjct 44959305 TCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCTT 44959364
Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498
|||||| | || | || | || || |||||||| || || | | ||||| ||
Sbjct 44959365 CACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATTGATAATTATTTC 44959424
Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558
| | | | | || | |||| ||| | ||| | || | |||| || || ||||||||
Sbjct 44959425 TCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAATC 44959484
Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618
||| || ||||| || ||||||||||| ||||| || |||||||| | || |||||
Sbjct 44959485 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCGG 44959544
Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
|||| || || ||||| ||||| | ||||| || || |||||||| | |||||||||
Sbjct 44959545 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCTAC 44959604
Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737
|| || || ||||| | || || | | ||| ||||||| |||||| |
Sbjct 44959605 TGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCT-CTTTGTCCCCAATCCAGCGCA 44959663
Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA--TAATTT 4795
| ||||| | || || ||||| || || || || || | || || || || ||| ||
Sbjct 44959664 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAATT 44959723
Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854
| ||| | |||| |||| || |||||||| || || || ||||||||||||||||
Sbjct 44959724 CCCTTTCTT---TGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAAT 44959780
Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914
|||| ||||| || ||||| || || || || || || | |||||||| | ||||||
Sbjct 44959781 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTA 44959840
Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974
| || ||||| || || || ||||| |||||||| || ||||| |||||||| ||
Sbjct 44959841 TTTGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 44959900
Query 4975 CCAAAACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033
||| |||||| |||||||| | || | || || ||||| || || |||||| | |
Sbjct 44959901 CCAGAACATGGGATATAAAAT-CTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATG 44959959
Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093
|| || | | || || ||||| ||||| || || || ||||| || || |||||
Sbjct 44959960 TCCTTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATC 44960019
Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131
||| |||||| | |||| || || | ||||||||
Sbjct 44960020 TGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057
Score = 127 bits (140), Expect = 2e-24
Identities = 332/509 (65%), Gaps = 37/509 (7%)
Strand=Plus/Minus
Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607
|| ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || |
Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889
Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667
|| ||||| | ||| || || ||||| ||||| ||||| || |||||||||||
Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829
Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727
| | ||| || |||||| ||| | | || || | | |||||| |
Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 144142769
Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787
||||| || |||| || || ||||| || || || ||||| | || || ||
Sbjct 144142768 ATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 144142710
Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843
|| | ||| |||| || || |||| ||||| ||||| || || || |||
Sbjct 144142709 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATAT--GTGTCAATAAGGAGATTATT 144142656
Query 4844 CATTTC--------------------------AGAATGTATATTTTCTATAGCAATCTGA 4877
||||| ||||||||| |||||||||||||| ||
Sbjct 144142655 TATTTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGG 144142596
Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAG 4937
||||| || ||||| | |||||| | |||||||| | | |||| ||| || |||
Sbjct 144142595 AATCCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAG 144142536
Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997
||||| | || ||| || |||| |||||||| || |||| || ||| |||||||| |
Sbjct 144142535 TTTTCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGT 144142476
Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026
||| |||||||| || || ||||||
Sbjct 144142475 CTTTCCTCAGGCTTCAGGGCTTCCCAGTG 144142447
>seq1
Length=229942017
Score = 140 bits (154), Expect = 3e-28
Identities = 140/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| || |||||||| || || || |||||||||||||||||| | ||||| || |||
Sbjct 89926880 TCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTGTGTTTTCCATGGCA 89926821
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931
|| || || | || || || |||||||| | |||||||| | | ||||| ||
Sbjct 89926820 ATTTGGAAGTCATAGAAACAGTGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCC 89926761
Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991
|| |||||||| |||||||| || ||||| |||||||| || |||| |||| | ||||||
Sbjct 89926760 ACCAAGTTTTCATTTACTATCCCATCACTTGCTGCAAAGAAAGCCAGAACACGGGATATA 89926701
Query 4992 AA 4993
||
Sbjct 89926700 AA 89926699
>seq10472
Length=202140232
Score = 111 bits (122), Expect = 1e-19
Identities = 175/248 (71%), Gaps = 6/248 (2%)
Strand=Plus/Minus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
||| ||||| |||| || ||||| || || | ||||| ||||| ||| || || ||||
Sbjct 7275711 AGCTCTAGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTGTTACAGAAGAGTAGC 7275652
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
||| | | ||| ||||| | ||||||||||| || || || || ||| | ||||||
Sbjct 7275651 TCCATGGTTTGGTTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTATCATAGATGA 7275592
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| || ||||||| ||||| ||| ||||||||||||| |||||| | || ||
Sbjct 7275591 AGATTACTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAG 7275533
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001
| ||||| | ||| | | || || || ||||| ||| ||| | || ||||
Sbjct 7275532 TCAGAAAAA--GTGATTGTATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAAT 7275475
Query 32002 AGAAGTAG 32009
||||| ||
Sbjct 7275474 AGAAGAAG 7275467
Score = 84.2 bits (92), Expect = 2e-11
Identities = 113/156 (72%), Gaps = 6/156 (4%)
Strand=Plus/Minus
Query 34294 AAAGGAAACAGCAAAAAC---ATACAAATGGTTCAGTATATTTATAAAAACACATCTTCT 34350
|||| ||||| || ||| | ||||||||| || |||||||| ||| ||||| || |
Sbjct 176063933 AAAGAAAACACAAAGAACGACAAACAAATGGTCCAATATATTTACAAATACACAAGTTAT 176063874
Query 34351 TACGGAGATCCTCTAATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCT 34410
| ||||| || || |||||||||||||||||| || || ||| |||| ||
Sbjct 176063873 CCTG---ATCCTATATTGCTGATGAAAAGCGCTAGAAATAGTTGTTGGTCTAAAGATGCA 176063817
Query 34411 GAGTACGGTCTTTACTCAGTATATCAAGGAGGAATA 34446
|| || || || || || | |||||||| ||||||
Sbjct 176063816 GAATATGGACTCTATTCCATCTATCAAGGGGGAATA 176063781
>seq47930
Length=60714840
Score = 105 bits (116), Expect = 6e-18
Identities = 154/213 (72%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831
|| ||||| || ||||| | | | ||||| ||||| || ||| || ||||||| ||
Sbjct 53956651 GTGAAAACGGACATTCAGACAGCGCTTCCTTCTGGGTGTTATGGA-GAGTAGCTCCAAGG 53956709
Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891
||||| ||||| | ||||||||| | || || | || ||||| | |||| ||| |||
Sbjct 53956710 TCTGGCTTGGCTGCAAAACACTTTGTTGATGTAGTAGCTGGTGTCACAGATGAAGATTAT 53956769
Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAA 31948
|||||||| ||||| |||| | ||||||||||| |||||| | | ||| ||||
Sbjct 53956770 AGAGGAAATGTTGGTGTTGTACTCTTTAATTTTGGCAAAGAAAAGT-TTGAAGT-CAAAA 53956827
Query 31949 AAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981
|| || ||| | | || || || ||||| |||
Sbjct 53956828 AAAGGTGATCGAATCGCACAGCTCATTTGTGAA 53956860
>seq5641
Length=113028656
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| |||||||| || | || ||||| | |||| || ||
Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || || |||||||| |||||||| || || ||||| |||
Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951
Query 4692 AC 4693
||
Sbjct 102562952 AC 102562953
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868
|| |||| || |||||||| || || || |||||||||||||||||||| ||||| ||
Sbjct 102565221 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 102565280
Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926
||||| || || || || || || | |||||||| | |||||||| | | |||||
Sbjct 102565281 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 102565338
>seq25851
Length=153482349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 98/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980
|||||||| || || ||||| ||||| || || ||||||||||||||||| || || |
Sbjct 108804268 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 108804324
Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040
||||| || ||||||| || || | ||||| || |||||||| || | ||| || |
Sbjct 108804325 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 108804384
Query 5041 TTAAATCAAC 5050
||| || ||
Sbjct 108804385 ATAAGTCGAC 108804394
Score = 86.0 bits (94), Expect = 5e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319
|| || || || ||||| || || |||||||| ||||| |||||||| ||||| ||||||
Sbjct 108786596 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 108786655
Query 4320 ATAAAATCAAACGGATT 4336
||||||||||| |||||
Sbjct 108786656 ATAAAATCAAAAGGATT 108786672
>seq20726
Length=174210431
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891
||||| ||||| | ||||| ||||| || || || || ||||| |||||| | | |||
Sbjct 86331946 TCTGGCTTGGCTGCAAAACATTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTAT 86331887
Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926
|||||||| ||||| |||| |||||||||||||
Sbjct 86331886 AGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 86331852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426729330816155
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