Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq51122 405 7e-108
seq1 131 2e-25
seq5641 120 4e-22
seq36523 105 1e-17
seq25851 105 1e-17
>seq51122
Length=156195299
Score = 405 bits (448), Expect = 7e-108
Identities = 653/935 (70%), Gaps = 13/935 (1%)
Strand=Plus/Plus
Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339
|||| ||||| ||||||| | |||| ||| ||| | | ||||| ||||||||
Sbjct 44959129 TTTAGAAGTCAGCATCTAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 44959188
Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399
| || || || ||||| | |||| || || ||||| ||| || ||| ||||| |
Sbjct 44959189 TCTGATACTCGCCTACTCTCCTCTCAAAGAAGTTAGT-----CTTTCAGTGAAATATTCT 44959243
Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459
||||||| ||||| || | || ||| || |||| || | ||| || |
Sbjct 44959244 CCATAAAGTCAAATGGGCTCTCTACTCCGAAAACCTTGCTAAAACCCAGTTCCAGCATAA 44959303
Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTT 46519
|||| ||||| || || || || || ||||| | | |||||||| || ||||| |
Sbjct 44959304 GTCTGTCTGCCACAAACTCAATGTATTGCTTCATTAGAGCGCAATTCATCCCAATGAGCT 44959363
Query 46520 TGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA-TTATC 46578
| || || | ||||| || || || || ||||| || ||||||| |||| ||||
Sbjct 44959364 TCACAGGCAAGGCCTCGGTGAGGAATTCCTGTTCTATCTGAACAGCATT-GATAATTATT 44959422
Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638
| | ||| | ||||| || | || | || ||||| ||||| || || ||||||
Sbjct 44959423 TCTCTCACTCTCTCCTCCGATGTTTTGTGTACCAGGTGTTTGAACATCAAGCAAGCAAAA 44959482
Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698
||||| || | || |||||||| ||||| | ||| || ||||| ||||| ||||||||
Sbjct 44959483 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATC 44959542
Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758
|||| || || |||||||| ||||| | || ||||| || |||||||| | |||||||
Sbjct 44959543 GGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGACGCCTTCT 44959602
Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCCACCTT 46815
|| || ||||| || |||| | || || || | || || || | |||||| |
Sbjct 44959603 ACTGCAGCGAAGGCTACAACACGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGC 44959662
Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875
|||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||| |||
Sbjct 44959663 AAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGATAAAT 44959722
Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935
| |||| | |||||| | || || || || | |||||||||||||| |||||
Sbjct 44959723 TCCCTTTCTTTGGGATCTTTGATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGT 44959782
Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995
|||||||| || || || || || || || ||||| | ||||| |||||||| || |
Sbjct 44959783 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTATT 44959842
Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055
|| |||||| || |||||| ||||| ||||| |||||||| || ||||| || ||
Sbjct 44959843 TGACTAAATCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAACC 44959902
Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115
| ||||| ||||||| | | || |||| |||| | ||||| || ||
Sbjct 44959903 AGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCGAATGTCC 44959962
Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175
|| || | || || ||||| | |||||||| || ||||| || || |||||||| | |
Sbjct 44959963 TTGGACAGGTCCACCTCTTCCGTGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGC 44960022
Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210
|| |||||| | || | ||| || || || |||||
Sbjct 44960023 CAGATATCATGGTACTCGATGGGGAAGATGACAAA 44960057
Score = 185 bits (204), Expect = 1e-41
Identities = 393/588 (67%), Gaps = 34/588 (6%)
Strand=Plus/Minus
Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689
|| ||||| | ||| || | || ||||| || ||||| | ||| || |||||||||||
Sbjct 144142948 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 144142889
Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749
|||||||| ||||| | || |||||||| ||||| || ||||| |||||||||||
Sbjct 144142888 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCAGAAAAGAAG 144142829
Query 46750 ATGCCTTCTACAGCCGCGAA---TGCGACAAG-TCTCTCTCCGTAACTGGCATCATTATG 46805
| | ||| || || || ||| ||| | |||| | ||||| | | | ||
Sbjct 144142828 GTACTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAAC-GTCTTTGTTCCC 144142770
Query 46806 AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865
|||||| | ||||| | ||||| ||||| |||| |||||||||||| || |||||
Sbjct 144142769 AATCCAACAGAAGACCCAACCTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATT 144142711
Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925
|||||||| | |||| | |||||||| |||||| || || | ||| ||| ||
Sbjct 144142710 GAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATATGTGTCAATAAGGAGATTATTTAT 144142653
Query 46926 TTCT--------------------------GAATGAATGTTTTCAATAGCCATCTGAAAT 46959
|||| ||||| |||||||| ||||| || || |||
Sbjct 144142652 TTCTCCTTATTGAATGTATGTTCTCTTAAAGAATGTATGTTTTCTATAGCAATTTGGAAT 144142593
Query 46960 CCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTC 47019
|| || || || | ||| |||||||| || ||| | |||| |||| ||| ||
Sbjct 144142592 CCATAGAAGCAGAAGGTTTCTGTAATCTGAACTTCTTGAACAAATTGTTCCACCAAGTTT 144142533
Query 47020 TCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 47079
|||| | ||| ||||||| || ||||| || |||| | ||| ||||||| | ||
Sbjct 144142532 TCATCTATTATCCCATCACATGCTGCAAAGAAAGCCAGAATATGGGATATAAAATGTCTT 144142473
Query 47080 TCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 47139
|| || | |||| | ||||| || || || || | || || || | ||
Sbjct 144142472 TCCTCAGGCTTCAGGGCTTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTGGGCC 144142413
Query 47140 GTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGA 47187
||||||| || ||||| |||| ||||||| ||||| |||||| ||
Sbjct 144142412 ATCCAGAAAGAAACCTCTACTTTCCTATACATTTTCCAAATATCATGA 144142365
>seq1
Length=229942017
Score = 131 bits (144), Expect = 2e-25
Identities = 242/352 (69%), Gaps = 10/352 (3%)
Strand=Plus/Minus
Query 46740 AGAA-AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCAT 46798
|||| ||||| || ||||| || || || || || |||| | || || || | || |
Sbjct 89927029 AGAAGAAGAAGATACCTTCCACTGCAGCAAAGGCTACAACACATTCACCATAGGTAGCCT 89926970
Query 46799 CATTATG---AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTT 46855
| || | ||| || || ||||||| ||||| ||| |||||||| |||||
Sbjct 89926969 CTTTGTCCCCAATACAACTCAAGGCCCAATTTGCCTT---CTTGACACAAGG---TGTTT 89926916
Query 46856 CTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAA 46915
| || | || |||||||| | |||| | |||||| | || || || || | |
Sbjct 89926915 CAATGGTGTTGAAGAGAAATTCCCTTTCTTTGGAATCTTTTATGTAAGTGTCAATAAGGA 89926856
Query 46916 GACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTG 46975
||||||||||||| ||||| ||||||| || || || || || | || ||||| |
Sbjct 89926855 GACTATACATTTCAGAATGTGTGTTTTCCATGGCAATTTGGAAGTCATAGAAACAGTGGG 89926796
Query 46976 CTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCAT 47035
|||| |||||||| || ||| | |||||| || ||| || ||||| ||||| ||||
Sbjct 89926795 CTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATCCCAT 89926736
Query 47036 CACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGT 47087
|||| || ||||| || |||| ||| | ||||||| | || |||||
Sbjct 89926735 CACTTGCTGCAAAGAAAGCCAGAACACGGGATATAAAATCACTCTCCTCGGT 89926684
>seq5641
Length=113028656
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| |||||||||||||| |||||||| ||||| || || |||
Sbjct 102562832 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 102562891
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| ||||| | || ||||| || |||||||| |||||||| || || || || ||
Sbjct 102562892 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 102562951
Query 46774 ACAA 46777
||||
Sbjct 102562952 ACAA 102562955
Score = 86.0 bits (94), Expect = 9e-12
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949
|||||| | || || || || | ||||||||||||||| ||||| |||||||| || ||
Sbjct 102565223 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 102565282
Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009
|| || || || || ||||| | ||||| |||||||| || ||| | |||||| ||
Sbjct 102565283 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 102565342
>seq36523
Length=132107971
Score = 105 bits (116), Expect = 1e-17
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781
||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | ||
Sbjct 66612664 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 66612723
Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841
||||| || |||| || |||||||| ||||| || ||||| || || | | ||||||
Sbjct 66612724 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 66612783
Query 75842 TTTCTGAGACCAT 75854
||||| | |||||
Sbjct 66612784 TTTCTTATACCAT 66612796
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398
|| || | ||| |||||||| ||||| | || || || || || || || || || ||
Sbjct 66640844 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCGATCCTGGCTGCCAGGATA 66640903
Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458
||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| |
Sbjct 66640904 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 66640963
Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504
|| | || || || || | || | ||||| || ||||||||||
Sbjct 66640964 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 66641009
Score = 86.0 bits (94), Expect = 9e-12
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579
|||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||
Sbjct 66623089 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 66623148
Query 76580 CACTC 76584
|| ||
Sbjct 66623149 CAGTC 66623153
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| || ||||| || | || || || |||||||| ||||| | |||||||| |||||
Sbjct 66634583 GTACCAGCATTGAAGAGAGTGGGTGAAGCATGAGTAAACCACCTCTCAGAAAGAAGATTA 66634642
Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113
||||| ||||| |||| || || || || || || || |||| || | |||||||
Sbjct 66634643 TATGTCTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 66634702
Query 77114 ATATGCTGAGGTCGTTC 77130
||||| || |||| |||
Sbjct 66634703 ATATGTTGTGGTCTTTC 66634719
>seq25851
Length=153482349
Score = 105 bits (116), Expect = 1e-17
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711
|||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| |
Sbjct 108797160 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 108797219
Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771
| ||||| |||||||| || |||||||| || ||||| | ||||||||||| || || |
Sbjct 108797220 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCAAAGG 108797279
Query 46772 CGACAAGTCTCTCTCC 46787
| || | ||| || ||
Sbjct 108797280 CCACCACTCTTTCCCC 108797295
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186
||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| |
Sbjct 108810485 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 108810544
Query 47187 ATATTGGATCGGAAAAATAACAAA 47210
|| ||||| ||||| || |||||
Sbjct 108810545 GTACTGGATTGGAAAGATGACAAA 108810568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712386019771200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |