Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08]
61,535 sequences; 3,441,244,233 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 4e-26
seq45237 118 1e-21
seq37270 118 1e-21
seq45999 93.3 4e-14
>seq1
Length=229942017
Score = 132 bits (146), Expect = 4e-26
Identities = 164/222 (74%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
|| || |||||||| ||||| ||| ||| ||||| ||||| ||||| ||||| ||| |
Sbjct 221679902 AGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAGAGAGTGTGG 221679961
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||| ||||| || |||||||| ||||| ||||| | || | | ||||
Sbjct 221679962 CCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGCGGGATACCCTCC 221680021
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823
||||| ||| |||| |||| || || | |||| || | ||| ||||| | ||
Sbjct 221680022 TTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGT 221680080
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| ||||| ||||| || ||||| || || |||||||||||
Sbjct 221680081 GATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 221680122
>seq45237
Length=73212453
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||||| ||||| ||||| || ||||||||| ||||| ||||| || || |||||
Sbjct 16727538 AGACGTAGGACCAGGTGCAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 16727479
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | |||| || ||
Sbjct 16727478 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCT 16727419
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | ||||| || | ||||||||||| ||
Sbjct 16727418 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 16727359
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 16727358 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 16727321
Score = 102 bits (112), Expect = 8e-17
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| ||||| || ||| ||||| ||||| ||||| || || || ||
Sbjct 16727310 AGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGG 16727251
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | ||||| || |||
Sbjct 16727250 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCC 16727191
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | ||||| || | ||||||||| | ||
Sbjct 16727190 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTG 16727131
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || || || || || || || ||||| |||||||| ||
Sbjct 16727130 ATGGTCTTGCCAGTAAGGGTTTTCACGAAGATCTGCATTTT 16727090
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || ||
Sbjct 16727757 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 16727698
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || || || | ||| ||||| | ||| | || || || || |
Sbjct 16727697 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCTTGG 16727638
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || ||||| | ||||| || | ||||||||||| || || || ||
Sbjct 16727637 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 16727578
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| ||||| ||||| ||||||||
Sbjct 16727577 CCGGTCAGGGTCTTCACGAAGATCTGCAT 16727549
>seq37270
Length=136387465
Score = 118 bits (130), Expect = 1e-21
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | |||||| ||||| || ||| ||||| ||||| ||||| |||||||||||
Sbjct 127297820 AGACGAAGCACCAGGTGCAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGT 127297879
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| || || || |||| | || || || | |||| || ||||
Sbjct 127297880 CCATCTTCCAGCTGCTTTCCCGCAAAGATCAACCTTTGCTGATCAGGAGGAATGCCCTCC 127297939
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| || | ||||||| || | | ||||| || | ||| ||||| | ||
Sbjct 127297940 TTGTCC-TGGATCTTTGCTTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCAAGGGT 127297998
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 127297999 AATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 127298037
>seq45999
Length=10578
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || ||
Sbjct 9258 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 9199
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
||||||||||| || || || || | ||| || || | ||| | || || || ||| |
Sbjct 9198 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCGGGGGGGATGCCTTCTTTATCCTGG 9139
Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833
|| || |||| | ||||| || | ||||||||||| || || || ||
Sbjct 9138 ATCTTGGCTTTCACATTTTTGATGGTGTCACTGGGCTCCACCTCCAGGGTAATGGTCTTG 9079
Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| ||||| || || ||||||||
Sbjct 9078 CCGGTCAGGGTCTTCACAAAGATCTGCAT 9050
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| |||| || ||||||||| ||||| |||| || || || |
Sbjct 9039 AGACGCAGGACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGCAGTCAGAAAGAGTACCG 8980
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| || || || || | ||| ||||| | ||| | || ||
Sbjct 8979 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCT 8920
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
|| ||| ||| || ||||| | ||||| || | |||||| |||| ||
Sbjct 8919 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 8860
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||| ||||| ||||| ||||||||
Sbjct 8859 ATAGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 8822
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461948401542000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |